Nannospalax galili (Upper Galilee mountains blind mole rat): 103746529
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Entry
103746529 CDS
T03372
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103746529 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngi03041
]
103746529 (Prpf40b)
Spliceosome [BR:
ngi03041
]
Complex A
U1 snRNP components
U1 related factors
103746529 (Prpf40b)
Complex B
103746529 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
DUF4936
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
103746529
NCBI-ProteinID:
XP_008846968
LinkDB
All DBs
Position
Un
AA seq
896 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVTGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVKQESTGKQQQTQQPQTLQPQPPQPQPDPPPVPPGPTPVPTGLLE
PERGRSEDCDMLEATQPREQGFLQQREEGPSSSAGQHRLQQEEEEAKPEPERSGLSWSNR
EKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEK
EEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLF
FLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMD
KEDALICFEEHIRALEREEEEEREQARLRERRQQRKNREAFQTFLDELHETGQLHSMSTW
MELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVN
TAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSM
LRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGR
KHSRKSKKHHRKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGG
ATLGGPGSPSSHLLLGSDHGLRKSKKPKKKTKKRRHKSNSPASETDPDEKVGKESEDREQ
EQDKDRELRQPDLPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgcccccaccagggatcccacctccctttcctccg
atggggctcccccctatgagtcagagaccgccagctattccccccatgcctcctggcatc
ctgcccccaatgcttccaccaatgggggcaccaccaccactcacacagataccaggaatg
gtacctccaatgatgccaggaatgctgatgccagcagtgcctgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtgactggtacaggccctccgagggccctatgg
agtgagcatgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcggagctgctactgtctcagtgtccc
tggaaagagtataaatcagacacaggaaagccttactactacaacaaccagagtcaggag
tcccgttggacccggcccaaggacctggatgacctggaggctttagtcaaacaagagtct
acagggaaacagcagcagactcagcagcctcagacactacagccacaaccacctcaacca
cagcctgacccccctcctgtacctcctggtcccaccccagtgcccacaggcctcctggaa
cctgaacgaggtcgaagtgaagattgcgatatgttggaggccacccagccccgggagcag
gggtttctgcagcagcgggaggagggccccagcagttctgctggacagcatcggctacaa
caggaggaggaggaagccaagccagaaccagagaggtctggcctcagttggagcaaccgg
gagaaggcaaagcaggcattcaaagagctgctgagggacaaggctgtaccttccaatgct
tcgtgggagcaggccatgaagatggtagttactgacccccgttacagtgccttgcccaaa
ttgagtgaaaagaagcaggcattcaatgcttacaaggcgcaacgggagaaagaagagaag
gaggaggcccgactgagagccaaggaggccaagcagaccctacagcatttcctggagcag
catgagcgcatgacctccaccactcgctaccggcgggcagaacagacctttggggacctt
gaggtctgggctgttgtccctgagagggatcgaaaagaggtttatgatgatgttctcttc
ttcctggccaagaaggagaaggaacaagccaagcagctccggcgtcgtaacatccaggcc
ctgaagagcatcctggatgggatgagtagtgtcaacttccaaacaacatggtcccaagcc
cagcagtacctcatggataaccccagctttgctcaggatcagcagctgcagaacatggac
aaggaagatgcgctgatctgctttgaggagcacatccgggctttggagagagaggaggaa
gaagagcgggaacaggcccggcttcgggagcggcgccaacaacgcaagaacagggaggct
tttcagaccttcctggatgagctgcatgagacgggacagctgcactccatgtccacctgg
atggagctgtacccagcagtcagcactgatgtccgctttgccaacatgctgggccagccg
ggctccacccctctggacttgttcaagttctatgtggaggagttgaaggcacgattccat
gacgagaagaagatcattaaggacattcttaaggaccggggcttctgtgtggaggtgaac
acagcctttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggac
gcaggcaacatcaagctgaccttcaatagtctgctggagaaagcagaagcacgggagagg
gaacgagagaaggaggaggcacgaaggatgcggcgcagggaagctgcctttcgaagcatg
ctgaggcaggccgtgcctgctctggagctgggcactgcgtgggaagaggtccgtgagcgc
tttgtgtgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttc
cgggagttcctgcaggtgctggagcagactgaatgccagcaccttcacaccaaaggccga
aagcacagcagaaagagcaagaaacaccatcggaagcgttcccactcaccttcagggtct
gagtcggaagaggaagagctgcccccaccatccctccggcctcccaagcggaggcgacgg
aacccctcagaatctggctctgagccctcatcctcccttgattcagttgaaagtgggggt
gctacccttggaggaccaggctccccatcctctcaccttctccttgggtcagatcatggc
cttcggaaaagcaagaaaccaaaaaagaaaactaagaaaaggagacacaagtcgaatagt
cctgcaagtgagacagaccctgatgagaaggttggtaaggagagtgaagacagagaacag
gaacaggacaaggacagggagcttcggcagccagacctccctaaccgctccccaggcttt
ggaatcaagaaggagaagacaggctgggatacgtctgaaagtgagctgagtgaaggggag
cttgagaggcgaagacggacactcctacagcagctggatgaccaccaatga
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