Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141: RG1141_CH32250
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Entry
RG1141_CH32250 CDS
T03208
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ngl
Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
Pathway
ngl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RG1141_CH32250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngl03400
]
RG1141_CH32250
Enzymes [BR:
ngl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RG1141_CH32250
DNA repair and recombination proteins [BR:
ngl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RG1141_CH32250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CDN55560
UniProt:
A0A068TDW9
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All DBs
Position
3196679..3199210
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AA seq
843 aa
AA seq
DB search
MALETYNQKRNFKVSPEPQGKVSGGRKAKASGNSFVIQKHDATRLHYDFRLELDGVLKSW
AVTRGPSFVPGEKRLAVHVEDHPLDYGGFEGMIPKGNYGAGAVLLWDRGTWDPIGDPHKG
YKKGHMEFELKGEKLEGRWHLIRMARREGEKRENWLLVKGEDEFARAEGDKDILDEMPLS
VKSGKTLDEIWGRKAPTGRSAGKPKAKTKSDPGREKSDIAASKIKGARKAELPDFVEPQL
ATLVKSAPSGKRWVHEIKLDGYRLQARIENGKVKLLTRTGLDWTHKFGDEIIAEFGKLSP
ADAIIDGEVAVEAGSGATDFSLLQQDLSEGRDDRFTFYAFDLLHLDGYDLTGATLLKRKE
ALETLLTGSGPALRFSEHFSDEGGLVLKHACRLSLEGIISKISDAPYRPGRGRDWVKSKC
SARQEFVIAGFVPSSVSRTAIGSLVMGYYDKGKLRHAGRVGTGYSNAMAQSLFKRLQEIQ
TGESPFDEKLAGVEKKDVVFVRPELVAEVEFRGWTADAHIRHAAFRGLREDKDPKDIVRE
GGPVNAAEQPKPPKRTVNLTHPDRVYWPDAGVTKAGLADYYTEVWRLMAPFVVNRPLALV
RGPDGIGKPLFFQKHGWKGMTKNAVLVKDPTDPAEEDITIRDLDGLLGLVQGATLEIHPW
GSTLDDWEKPDMVNIDLDPGEGVSWTDIIAAAHEVKRRFEDMGLVAFVKTSGGKGLHVVA
PVKPKAEWPEVKAAMKALADGMAGDDPDKYVSTITKSKRSGKILIDYLRNGRGNTAVAPY
STRARPGAPVSMPVEWDELGGAIGPNYFTAINAPARIAQQTSDPWGDFRKAEAPIEFKAK
KKR
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaacctataatcaaaagcggaatttcaaggtgtccccggagcctcaagga
aaggtctccggcggccgcaaggccaaggcatccggcaacagtttcgtgatccagaagcac
gacgccacccggctgcattacgatttccggctggaactggacggtgtgctgaaaagctgg
gccgtgacccggggcccaagtttcgttcccggcgaaaagcggctggcggtgcatgtggaa
gaccatccgctcgattacggtggtttcgaaggcatgatccccaaaggcaattacggcgcc
ggcgcggtgctgctgtgggaccgcggcacctgggatccgatcggcgatccacacaagggt
tataagaaaggccatatggaattcgagttgaagggcgagaagctggagggccgctggcac
ctgatccgcatggcccgcagagagggcgaaaaacgcgagaactggctgctggtgaaaggc
gaggacgaattcgcccgcgcagagggcgacaaggacattctcgacgaaatgccgctttcg
gtaaagtcaggcaagacactggacgaaatctggggccgcaaagcgccgacgggaaggagt
gctggcaaaccgaaggcgaagacgaaatccgatcccggacgggaaaaatccgacatcgct
gcctcgaagatcaagggcgccaggaaagccgaactcccggatttcgttgagccgcagctt
gcgacgctggtgaagagcgcgccctccggcaaacgctgggtccacgagatcaagctcgac
ggctatcgcctgcaggcccgtatcgaaaatggcaaggtaaagctgttgacgcgcaccggg
ctggattggacgcataagttcggagacgagatcatcgcggaattcggaaagcttagcccg
gccgatgcgattatcgatggggaagtagcggtcgaggccggttccggcgccaccgatttc
tccctgctccagcaggacctgagcgaaggccgggacgaccggttcaccttctacgcattc
gacctgttgcatctcgacggttacgacctgaccggcgcgacgcttctgaagcgcaaggag
gcgctggaaacactgctaaccggcagcggcccggccttgcgcttcagcgagcattttagc
gacgaaggcggtctggtcctgaaacatgcctgccggctgagcctcgaaggcatcatttcc
aagatatcggatgcgccctatcgccctggccgcggccgcgactgggtgaagtcgaaatgt
tcggctcgacaggaattcgtgatcgccggatttgtcccctcctccgtttcgaggacggcg
atcggatcgctggtcatgggatattacgacaagggaaaactgcggcatgccggtcgcgtc
ggcaccggttattcgaatgccatggcgcaatcgctcttcaagcgcctccaggagatccag
actggcgaaagcccgtttgacgaaaagctcgcgggggtggaaaagaaggacgtcgttttc
gtgcggcccgagctggtggcagaagtggaatttcgcggctggacggcggatgcgcatatc
cgtcacgccgccttccggggcttgcgcgaagacaaggatccgaaggatatcgtccgggag
ggcggacctgtgaatgcagcggaacaaccgaagccaccgaaacggacagtcaatcttacc
catccggaccgggtctactggccagatgccggtgtgaccaaggccgggcttgcagattat
tacaccgaagtctggcggctgatggcgcccttcgtcgtcaaccgcccgctggccctggtg
cgtgggccggatgggatcggtaaaccgctcttcttccagaaacatggctggaagggcatg
accaagaacgccgtgcttgtgaaggaccccaccgatccggcggaagaggatatcaccatc
cgcgacctcgatggattgctcggcctcgtccaaggggcaacgctggaaatccatccctgg
ggctcgacgcttgacgactgggaaaagccggacatggtcaatatcgacctcgacccggga
gaaggcgtctcctggaccgatatcatcgctgccgctcatgaggtgaagcgccgtttcgag
gacatggggctggtggccttcgtcaagacctcgggcggcaagggcctgcatgtcgtcgca
ccggtcaaaccaaaggcagaatggccggaggtgaaggcggcgatgaaggcgctcgccgac
ggcatggccggcgacgaccccgacaaatatgtatcgacgatcaccaagtcgaagcgaagc
ggcaagatcctcatcgactacctgcgcaacggtcgcggcaatactgccgtcgccccctat
tccacccgtgcccgccccggcgcaccggtttccatgccggtcgagtgggacgaactcggc
ggcgcgatcggccccaactatttcacggccatcaacgccccggcgcgcatcgcccagcag
acgagcgatccgtggggagattttcgcaaggcggaagccccgatcgagttcaaggcaaag
aagaaacggtag
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