Nocardia gipuzkoensis: LTT66_06125
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Entry
LTT66_06125 CDS
T07945
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTT66_06125 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngp03021
]
LTT66_06125 (rho)
03019 Messenger RNA biogenesis [BR:
ngp03019
]
LTT66_06125 (rho)
Transcription machinery [BR:
ngp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LTT66_06125 (rho)
Messenger RNA biogenesis [BR:
ngp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LTT66_06125 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
UGT69759
LinkDB
All DBs
Position
complement(1316137..1318080)
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AA seq
647 aa
AA seq
DB search
MIENTDVARSGLTGMLLPQLRALAGELGIRGTSGMRKGDLIAAIKENQAGKSAKAEKPAK
GEAKSAATAKADAPAKNAAPAASAPAKAEQATLDVTPTASAASTEAPAPAKKAPADSAPA
AEPASSTATETTEESGRESGQRGRGRQRRGRDQARSASAETAPAETRADEPKQDSEQGGE
RRRERGQGERQSERGQGERQSERGQGERGQGERGQSQNGSAGGRGGDDEEGGRGRRGRRF
RERRRGRDRDGGGSGGEARELEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVS
MNLVRKNGLRRGDAITGAVRAPRDGEQANQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKL
TPLYPNQRLRLETQPNKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNN
PEVYLMVVLVDERPEEVTDMQRSVRGEVISSTFDRPPSDHTSVAELAIERAKRLVEMGRD
VVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATA
MVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLNPDEAAV
LHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGALDE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaaacaccgacgtcgcacgatcggggctgactggaatgttgttgccgcagttg
cgcgcgcttgcgggggagctcggtatccgaggcacctccggaatgcgcaagggcgatttg
atcgccgccatcaaggaaaatcaggccggaaagtcggcgaaggcggaaaagcccgccaag
ggcgaggccaagtccgcggcaaccgccaaggccgatgcccccgcgaagaacgcggctcct
gccgcgtcggcgcccgccaaggccgagcaggcgaccctcgacgtgacgcccacggcttcg
gccgcgtccaccgaggctcccgccccggcgaagaaggctcccgccgattccgcgcccgcc
gccgagccggcctcgtccacggccaccgagaccaccgaggagtccggccgggagagcggc
cagcgtggtcgtggcaggcagcggcgtggccgtgaccaggcgcgatccgcatccgccgag
acggctcccgccgagacgcgtgccgacgaaccgaagcaggacagcgaacagggcggcgag
cgccgccgcgagcgtggtcagggcgagcggcagagtgagcgtggtcagggcgagcggcag
agcgagcgcggccagggcgagcgcggccagggcgagcgcggccagagccagaacggcagc
gcgggcggccgtggcggcgacgacgaggaaggcggtcgcggacgacgcggacgccgcttc
cgggagcgtcgtcgtgggcgcgaccgcgacggtggcggtagcggtggcgaggcccgcgag
ctggaaatccgcgaggacgacgtcctgcagccggtcgcgggcatcctcgacgtgctggac
aactacgccttcgttcgcacctcgggttacctggccgggccgaacgacgtctacgtgtcg
atgaacctggtccgcaagaacggtctgcgccgcggcgacgccatcaccggcgcggtgcgc
gcccctcgtgacggcgaacaggccaaccagcgccagaagttcgatccgctggtgcggctg
gacacggtcaacggcggcgacgtcgaggcggccaagcgccgtcccgagttcggcaagctc
accccgctgtacccgaaccagcgcctgcggctggagacccagccgaacaagctgaccact
cgcgtgatcgacctgatcatgccgatcggcaagggccagcgcgccctgatcgtgtcgccg
ccgaaggccggtaagaccacgattctgcaggacatcgccaacgcgatcgcgaccaacaac
cccgaggtctacctcatggtcgtgctggtggacgagcgtcccgaagaggtcaccgacatg
cagcgttcggtgcgcggcgaggtcatctcctcgaccttcgaccgcccgccgtcggaccac
acctcggtcgcggagctcgccatcgagcgcgccaagcgcctggtggagatgggtcgggac
gtcgtcgtgctgctcgactcgatcacccggctcggccgcgcgtacaacaactcctcgccc
gcctcgggccgaatcctctccggtggtgtggattccaccgcgctgtacccgcccaagcgg
ttcctcggcgcggcgcgcaacatcgagaacggcggctcgctgacgatcatcgccaccgcc
atggtggagaccggttcgaccggtgacacggtgatcttcgaggagttcaagggcaccggc
aacgccgagctcaagctggaccgcaagatcgcggagcggcgagtgttccccgcggtggac
gtcaacccgtccggtacccgcaaggacgagctactgctcaaccccgatgaggcggcggta
ctgcacaagctgcgccgcgtactgtccggcctggactcgcaccaggcgatcgatctgctg
atcgaccgactgaagaagtccaagaacaacctcgagttcctgatgcaggtgagcaagacc
gcgccgggcgcgctcgacgaatag
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