Nocardia gipuzkoensis: LTT66_16680
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Entry
LTT66_16680 CDS
T07945
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LTT66_16680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_16680
Enzymes [BR:
ngp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LTT66_16680
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LTT66_16680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UGT71633
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All DBs
Position
3704042..3706363
Genome browser
AA seq
773 aa
AA seq
DB search
MAARRAFGGIEVDLSNLDKVLYPATGTTKGEVIAYYSAIAPAMLPHIAGRAVTRKRWPNG
VDEPSFFEKNLPSHAPSWIERRTLRHSDRKVHYPLIDSEAGLAWLAQQAALEIHVPQWRF
DGDEMGAATRLVFDLDPGKGVGLAECAEVALAVREMVEGIGLHAFPVTSGSKGIHLYVPL
DRELSPGGASTVAKQVATNLQRLHPDLVTSTMAKAARGGKVFLDWSQNNPAKTTIAPYSL
RGRPEPNVAAPRTWKEIEHRKKLRHLRFDEVLARYRSDGDLLAELDPPPARRASSSVQAG
PDALRKYRSMRDPARTPEPVPAEAPEPGTNNRYVVQEHHARRLHWDVRLERDGVLVSWAV
PKGPPTSPEQNRLAVHTEDHPMEYLDFHGAIPKGEYGAGEMTIWDSGTYETEKWRDDEVI
VRFHGKRLTGRYALIQTNGNQWLMHLMRAPGDAEPQQEADKSPGRIIRPANGPAPLPRGL
APMLATPGDVTELGADEWCFETKWDGFRLIAEIDSGAITLRSRAGNVVTDRYPGIAALQR
ELSGHRVVLDGEAVVFDDHGVATLGLLQADAARAAFVAFDVLYLDGTSLLRKRYADRRRV
LEALAANAPSLVVPPRLDGSGAEALRYSQEQGLEGVVAKRKDSVYLPGKRGHSWVKQRNW
RTQRVLIGGWRRSTARDFKSLLVGIPHDGRLVYVGRVGTGFDESDMRDLAGRLRKLERKT
SPFDNDLTAEERKEAVWVTPKLGGTVRFMNWTETGRLWHPAWLGAAPHAREAG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgccgcgcgttcggtggtatcgaggttgacctgagcaacctcgacaaggtg
ctgtatccggccaccggcacgaccaaaggcgaagtcatcgcctactattcggcgatcgcg
cctgccatgctgccgcatatcgccgggcgggcggtcacccggaagcgctggcccaatggg
gtcgacgaaccgtccttcttcgagaagaatcttccgtcgcacgcgccgtcctggatcgag
cggcgcacgctgcggcattccgatcgcaaggtccactacccgctgatcgattccgaagcc
gggctggcctggctggcgcagcaggccgcgctggaaatccatgtgccgcagtggcgtttc
gacggcgacgagatgggcgcggcgaccaggctggtcttcgacctggacccgggcaagggc
gtcgggctcgccgaatgcgccgaggtggcgcttgcggtgcgcgagatggtcgagggcatc
ggtttgcacgccttcccggtcaccagcggcagcaagggcattcacctctacgtgccgttg
gatcgcgagctgagcccgggcggcgcgtccacggtggccaagcaggtggcgacgaatctg
caacggctgcacccggacctggtcacgtcgacgatggcgaaggcggctcgcggcggcaag
gtctttctggactggagccagaacaaccccgccaagaccacgatcgcgccctactcgttg
cgggggcggccggagccgaacgtcgccgccccgcgcacgtggaaagagatcgagcaccgg
aagaagctgcggcacttgcggttcgacgaggtgctggcccggtaccgatcggacggcgat
ctgctggcggagctggatccaccgccggcgcggcgtgcttcgtcctcggtgcaggcagga
ccggacgcgttgaggaagtatcgctcgatgcgtgatccggcccgcacgccggagcccgtc
cccgccgaggcgcccgagccggggacgaacaatcgctacgtggtgcaggagcatcatgcg
cggcggctgcactgggatgtgcggctggagcgcgacggtgtcctggtgtcctgggccgtg
ccgaagggcccgccgacctcgccggagcagaatcgcctcgcggtgcacaccgaggaccat
ccgatggagtatctcgacttccacggcgccatcccgaagggcgagtacggcgcgggtgag
atgacgatctgggactccggcacctatgagaccgagaagtggcgcgacgacgaagtcatc
gtccggttccacggcaagcggctcaccggccggtacgcgctgatccagaccaacggcaac
cagtggctgatgcacctgatgcgtgcgcccggcgatgccgaaccccagcaagaggcggac
aagtcgccgggccggatcattcgcccggccaatgggcccgcgccgctgccgcgcggactg
gcgccgatgctcgcgactcccggcgacgtcaccgaactcggcgccgacgagtggtgcttc
gagacgaagtgggacggcttccggctgatcgccgaaatcgactccggcgcgatcaccttg
cgcagccgggcggggaacgtcgtgaccgaccgctatcccggcatcgccgcgttgcagcgg
gagttgtccgggcaccgagtggtgctggacggcgaggcggtcgtcttcgacgatcacggc
gtggcgaccctcggtctgctgcaagccgatgcggcgcgggccgccttcgtcgcgttcgat
gtgctgtacctggacggcacctcgctgctgcgcaaacgctacgccgatcgccgcagggtg
ctcgaggcgctcgccgcgaacgcgccgtcgctggtggtgccgccgcgactggacggctcg
ggcgccgaagccctgcgctacagccaggagcaggggctcgagggcgtggtcgcgaaacgc
aaggattcggtgtatctgccgggcaagcgcgggcattcctgggtgaagcagcgcaactgg
cgcacccagcgggtgctgatcggcggttggcggcgcagcacggcgcgggatttcaaatcg
ctgctggtcggcattccgcacgacgggcggctggtctacgtcggccgggtcggcaccggc
ttcgacgagtcggacatgcgggatctggcgggtcgcttgcgcaagctggagcggaagacc
tcgccgttcgacaacgacctcaccgcggaggagcgcaaggaggcggtgtgggtgacgccg
aaactcggtggcaccgtgcggttcatgaactggaccgagacgggacggctgtggcacccg
gcctggctcggcgccgcgccgcacgcgcgcgaggctgggtag
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