Naegleria gruberi: NAEGRDRAFT_34964
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Entry
NAEGRDRAFT_34964 CDS
T01241
Name
(RefSeq) RNA polymerase II transcription factor TFIIH subunit
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ngr
Naegleria gruberi
Pathway
ngr03022
Basal transcription factors
ngr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NAEGRDRAFT_34964
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_34964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_34964
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_34964
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NAEGRDRAFT_34964
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NAEGRDRAFT_34964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
Tfb4
VWA_2
IBR
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
8863006
NCBI-ProteinID:
XP_002682998
JGI:
Naegr1_34964
UniProt:
D2V005
LinkDB
All DBs
AA seq
349 aa
AA seq
DB search
MYWNAANSTNSTKSLIPQEKTIIKKGIIRFLYLVIDCSNGIMLPSQHDEKTSRAQSVIST
AKEFIKEYFDQNPLSQLGIITTKNGVAKILKELTGNVKQLVSELKKSFGGDPSLQNVLNL
SYDSLHQIPNYGSKEVVVIYCSLSSCDPDNIFSTIKQLKDNNIRVSLISLDAEVFVCKQI
AKQTQGTYSVPTDDEHFKEVLMAHAAPPPTTSSSSTKIVAPPSMRMGFPQRRAQTLYSMC
LCHKKITPGGYICPRCKSKYCDLPVECSTCGLMLVSSPHLARSYHHLFPVQQFIDYQPRE
GEEPYCYGCQKSLPKESFISLQCPSCSNIFCVECDAFIHESLHNCPGCN
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtattggaatgccgctaatagtactaattcaacaaaatcattaattccacaggaaaaa
acaatcatcaagaagggaattattagatttttatatcttgtcattgattgcagtaatgga
ataatgttaccatcacaacatgatgagaaaacatcccgagcacaatccgttatttcaaca
gcaaaggaattcatcaaggaatattttgatcaaaatccactctcacaattgggaattatt
accacaaagaatggtgttgcaaaaattttaaaagaactaacaggaaatgtaaagcaacta
gtatcagaattgaaaaagtcttttgggggagatccatcacttcaaaatgtattgaaccta
agttatgattcacttcatcaaatacccaattatggttctaaggaagttgtggtaatctat
tgttcattatcgtcctgtgatcctgataatattttctcgacaatcaaacaactcaaagat
aataatattagagtttcattaattagtttggatgctgaggtgtttgtttgcaaacaaatt
gcaaaacaaacccaaggtacttatagtgtaccaacagatgatgaacatttcaaagaagta
ttaatggcacatgcagctcctcccccaactacatcctcttcttctacaaaaattgtagct
cctccatccatgagaatgggtttccctcagagaagagctcagactctctactctatgtgt
ttatgtcacaaaaagattacacctggtggatatatctgccctcgctgtaaaagtaaatat
tgtgacttgccggttgagtgctcaacctgtggattaatgcttgtttcctctcctcatttg
gctcgttcataccaccatcttttcccagtacaacaattcattgattatcaaccaagagag
ggagaagaaccctactgttatggatgtcagaaatcattgccaaaagaatcatttattagt
ttacaatgtccaagttgcagtaatattttctgtgttgaatgtgacgcttttattcatgag
tctcttcataattgtcctggatgtaattaa
DBGET
integrated database retrieval system
