Naegleria gruberi: NAEGRDRAFT_68362
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Entry
NAEGRDRAFT_68362 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ngr
Naegleria gruberi
Pathway
ngr03022
Basal transcription factors
ngr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NAEGRDRAFT_68362
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_68362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_68362
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_68362
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NAEGRDRAFT_68362
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NAEGRDRAFT_68362
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
SinI
Motif
Other DBs
NCBI-GeneID:
8863325
NCBI-ProteinID:
XP_002676350
JGI:
Naegr1_68362
UniProt:
D2VHK9
LinkDB
All DBs
AA seq
532 aa
AA seq
DB search
MSFNASSSSQPTKSVNEGLDSSDNIFSYLLTLTPDELNLLYGHTWTCKAVFRFLPDIAKQ
YVMRMLLCGSINSQQIAMDIPKKLTNLSGYLDSNGAKKGREQDQEAILQEVRDAHENAFS
QLLKYRIISKTSNSDFTLNRYFQDTFRNLVTSVPSAQAPTTSHSSSHKRKEQEPETSISE
ENMDELEPKKKKRKKHKTKEIGAEFLQEYSKRKWENVLLYLVGTAAESEQTFSGNVNELL
KYSQLIKKSDTVRITNEGFQFLLQETKVQVWKLLKHYLETSGQRNQVKNEILNFIFELGF
LDVGKEYSSKDLTSTQKSLLVDFNDLGIIYLHRDKKKKIKDKYFFPTPLAKSLTVSMSTS
YDLISSFGSHNSINNGYIIVETNYRVYAYTNSPLQIALLSLFIFPEYRLPNMVVGLITRS
TIREALKNGISAHQILQFLRLNAHPQMRLKKPVIPDTVSDQILLWEKERNRVIKTTSVVY
DKFTNVSELNATVDYARRQGALLWHSEEKMMMVCKREFHGLMKEFISSQYSR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaacgcttcttcatcatcacaacctacaaaaagtgttaatgaagggttggat
tcatcggacaatatattttcctatttattgactttaacaccagatgagttgaatttattg
tatggtcacacttggacatgtaaagctgtgtttagattcttgccggatattgctaaacaa
tatgtgatgagaatgttgttgtgtggtagtattaatagtcaacaaattgctatggatatt
cctaaaaaacttactaacttgtctggatatctcgattccaatggagcaaagaaaggaaga
gaacaagatcaagaagcaattttacaagaagtaagagatgctcacgaaaatgccttttca
caacttttaaaatatagaatcatttcaaaaacatcaaattccgattttacactcaataga
tatttccaagatacatttaggaatttagtcaccagtgtaccatcagcacaagctccaaca
acaagtcactcctctagtcacaagaggaaggaacaagaaccagaaacaagtatatcagaa
gaaaatatggatgaattggaaccaaaaaagaaaaagagaaaaaagcacaagactaaggaa
attggagctgaattcttacaagaatattctaaaagaaaatgggaaaatgtactgttatat
ctagtaggaacagcagctgaatcagagcaaacattctcaggaaatgttaatgaactgctc
aagtattcacaattaatcaaaaaatctgatactgtaagaattaccaatgaaggtttccaa
tttttacttcaagaaaccaaagttcaagtttggaaacttcttaaacattatcttgaaaca
tctggacaaagaaatcaagtcaagaatgaaattcttaattttattttcgaattgggattt
ttggatgttggaaaagagtatagtagtaaggatctgacaagtactcaaaagagtttactc
gtcgattttaatgatcttggtataatttatcttcacagagataaaaagaagaagattaaa
gacaagtacttcttcccaacacctctcgccaaaagtttgaccgtctcaatgagtacaagt
tatgatttgatttcatcatttggatctcacaatagtatcaataatggatatattattgta
gagaccaactatagagtttatgcctatactaattctccactccaaattgctctcctttcc
ctatttattttccctgaatatcgtttaccaaacatggttgttggattaattacaagaagt
acaatcagagaagctttgaaaaatggtatcagtgcgcaccaaattcttcaattcttaaga
ttgaatgctcaccctcaaatgagactaaagaagcctgtcattcctgatactgtctctgat
caaattctcctctgggaaaaggaaagaaacagagttatcaagactaccagtgttgtatac
gataaatttaccaatgtaagcgaattgaatgccaccgttgactatgcaagaagacaagga
gctcttttgtggcacagtgaagaaaagatgatgatggtttgcaagagagaattccacgga
ctgatgaaggaatttatttcaagtcaatattctagataa
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integrated database retrieval system
