Naegleria gruberi: NAEGRDRAFT_79495
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Entry
NAEGRDRAFT_79495 CDS
T01241
Name
(RefSeq) ATP-dependent DNA ligase IV
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NAEGRDRAFT_79495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_79495
Enzymes [BR:
ngr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NAEGRDRAFT_79495
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
NAEGRDRAFT_79495
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
8850352
NCBI-ProteinID:
XP_002677960
JGI:
Naegr1_79495
UniProt:
D2VDE2
LinkDB
All DBs
AA seq
1059 aa
AA seq
DB search
MFRNPFLVVDDDEDETLSETTTNNKHSNNMNNLILHNDEEIENSCPSAVRAMMNDSRMDI
FINADDDDDEDEDDDTSKSNSQTSGANSTKSNTLHNKENSSRTNNEQNINNNNNLFAGMI
GNSNGTPLPAHPPPVYDPNLPSCRVQFATLCKYFEKLSENNKHKEKKAIFDKIFVSCRSD
LFQFMRLLLPQLDRERLTYGLKESKIAKYYIEILALPQTCEDALRLKKWKDPSKGTGNSF
SDICFQVLQKRGWSSSKNLTVFFINEKLTELSMAGDNDKKKKILLDILKSTSCFEQKWIL
RIILKDLRIGTQHTTILNHFHPNALELFNSCTDLREVITKCLDPKFKFTTAELRVFSMFK
PMLASLLHPAKLAETLSSDEYVIEPKYDGERILVHKKESEIMFFTRNGKDYTSLYGPKFS
PIIRNNIKAKVCILDGEFLIWNTELEAFKEFGHNRTHALNDTSDTNEQFCYMVFDLVYLK
DKDLSQYPLKKRRTYLENIINLQSHVLELVPQTPVSSEKEVYEQLDIAIMNRDEGIMLKP
TGGVYIPGERKWIKLKPDHVDGMGETLDVIIVGGFYGTKFKRKSVSHFLLAVATRSKHSL
GNTDALDNLDEENEASNENQVFHSFCKVGSGYTNIELLALQKDLESHWKPFDKTKLPKFY
GQWIPGAGEMPDVYIEPKHSKILEIKGYSFQESTKFKTGVTLRFPRVVSIRNDKDWNECL
DLQGLEEMIEISRNGNHKRRAANMDSVVSHNDIKKQKRKKMVQNPDGTFTEVEPKSRKAT
AAVSHFFDYDMSKLDKTSSLFKGLEFVVFNGDEHKSKYDIEQLIVSNSGTKVQNPNDHKN
QYLIAANTNNITVRNWISSSQNRKNPLGDRDIIHYKWLIESVIYGSLQRFHPGYMIYTSQ
ATLLSFKEQMDEFQDEYLFDATVESLRNSLQLASLSSKYFVLDSKQIDMINSRYEIKTSQ
TSFFKGVVAFIDKYEKFGDPSSELILGLDTLEVYIRLHGGKVSNLLTTEVTHIVHDESEN
TTRLQSLKRKAARVNLKLVSGDWVRKCVEERRLIPEISV
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaaatcccttccttgttgtggatgatgatgaggatgaaactctttcggaaaca
acaaccaacaacaagcacagcaacaatatgaataatctaatactacacaacgatgaagaa
attgaaaacagttgtccatcggccgttcgtgccatgatgaacgactcacgaatggatata
ttcatcaatgctgatgatgacgatgatgaagatgaagatgacgatactagtaaatcaaac
tctcaaacgagtggtgccaatagtactaaaagtaatacccttcacaataaggaaaattca
tctcgaaccaacaatgaacaaaatattaataataataacaatctctttgctggtatgatt
ggtaattcgaatggaacacctctacctgctcatcctccaccagtgtatgatcctaacctt
ccatcgtgtagggttcaatttgcaacattgtgtaaatactttgaaaaactttcggaaaat
aacaaacataaggagaagaaggcaatctttgataagattttcgtgagttgtcgaagtgat
ttgtttcaatttatgagattacttctccctcaattggatagagaaagactgacttatggc
ttgaaagagtcgaaaattgccaagtattatattgaaattctggctcttccacaaacgtgt
gaagatgctctgagattgaaaaagtggaaagatccatctaaaggaactggaaacagcttt
tcggatatttgctttcaagtcttgcaaaagagaggttggtcctcatcgaaaaatctaact
gtattctttattaatgaaaaactaactgaactatcaatggctggggataatgataaaaaa
aagaagattctgttggacattctcaagagcacttcatgctttgaacaaaagtggattctc
agaattattctcaaagatttaagaattggaactcaacacaccactattctgaatcatttt
catccgaatgcactcgagttgttcaattcatgtactgatctgagagaggtcattacaaag
tgtctcgatccaaagtttaaattcacaacagctgaattgagagtcttttcaatgttcaaa
ccaatgcttgcttcattgttgcatccagctaaattggctgaaactctctcctctgatgaa
tatgtcattgaacccaaatatgacggagaacgtatcctggtacacaagaaggaatctgaa
atcatgttctttacacgtaatggcaaggactatacgagcttgtacggtccaaagttttca
cccatcattagaaataatatcaaggcaaaagtttgtatattagatggagagtttctcatt
tggaatactgagctggaggcctttaaggaatttggacacaatagaactcatgctctgaat
gatacatccgatacaaatgaacaattttgctacatggtctttgatttagtctatttgaaa
gataaggacctatcacaatatccactcaagaagagaagaacctatctggagaatatcatt
aatctccagagccatgttctcgagttggtacctcaaactccagtatcatcagagaaggaa
gtttacgagcagttggatattgccatcatgaatagagatgaaggtatcatgctcaaacca
acaggaggcgtctatattccaggtgagagaaagtggatcaaattgaaacctgatcatgtc
gatggtatgggtgagacattggatgtaattattgttggaggattctatggaaccaaattt
aagagaaaatcagtttcacactttctgttagctgtagccacaaggtcaaaacacagtctg
gggaacacggatgctctcgataatttggatgaggaaaatgaagcaagcaatgaaaatcaa
gtttttcactcattttgtaaagtaggaagtggatataccaacattgaattgttggctcta
caaaaagatttagaatctcattggaagccttttgacaagaccaagttgcctaagttttat
ggtcaatggattccaggagcaggtgaaatgcctgatgtatatattgaaccgaaacattcc
aagattttggaaattaagggatactcttttcaggagagtaccaaatttaaaacaggagtc
acactaagattcccaagagttgtatcaataagaaacgataaggattggaatgaatgtctg
gatttacaaggattagaggaaatgattgaaatatcaaggaatggtaatcacaagagaaga
gctgccaatatggactctgttgtttcacacaatgatatcaagaaacaaaagagaaaaaag
atggttcaaaatcctgatggaacgtttacagaagtggaaccaaaatcaagaaaggcaaca
gctgctgtttcacatttctttgattatgatatgtctaaactggataagacctctagctta
tttaaaggattggaatttgttgttttcaatggagacgaacataaatccaagtatgatatt
gaacaattgatagtttccaatagtggaactaaagttcagaaccctaacgatcataagaat
caatatctcatcgctgccaatactaataatattactgtaagaaattggataagttcctca
caaaatagaaagaatccactaggagatcgcgatattattcattacaagtggttgattgaa
tcggtaatatatggctctctgcagagattccatccaggatacatgatttatacttctcaa
gccacattgctctcattcaaagagcaaatggacgaatttcaagatgaatatttgtttgat
gctacggtggaatcattgagaaactcgcttcaattagcctcactttcatccaagtatttc
gttctagactcaaagcaaattgatatgattaattcacgatacgagattaaaacatcacaa
acatcattcttcaagggagttgtagcttttattgacaagtatgaaaagtttggagatcca
agctcagaactgattcttggattggacactttggaagtttacattcgtttacacggagga
aaggtcagtaatttactcaccactgaagtgacacatattgtgcatgatgagagtgaaaat
accacccgcttacaatcactaaagagaaaggcagctagagtaaacctcaaacttgtctct
ggggattgggttaggaaatgtgtagaagaaagaagattaattccagaaatctctgtctaa
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integrated database retrieval system
