Nitrosococcus halophilus: Nhal_1117
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Entry
Nhal_1117 CDS
T01198
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
nhl
Nitrosococcus halophilus
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nhl03016
]
Nhal_1117
Enzymes [BR:
nhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Nhal_1117
Transfer RNA biogenesis [BR:
nhl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Nhal_1117
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ADE14288
UniProt:
D5BZJ3
LinkDB
All DBs
Position
1114520..1115059
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AA seq
179 aa
AA seq
DB search
MSLNSPTETQRLFFALWPEQALQESLARIARQVLGKQGKRVRPENLHLTLVFLGSMTAQQ
RACAEAVADTIVGSPFTLQLEQIGHWPRPRVVWCAAEETPEPLIELVKQLNQGLTACGYQ
PETRPYRAHMTLARKVAGRFPTTRVAPLVWQVDHFCLVQSVTHPSGVQYQVLRTWPLVI
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgaacagtccaactgaaacccagcgtttgttttttgccctctggcctgaacag
gcgttgcaggagtccttggctcgaattgcccggcaggtattgggtaagcaggggaaacgg
gttcgccctgagaatctgcacttgactttggtttttttggggagtatgacggcgcaacag
cgtgcctgtgccgaagcggtggccgatactattgtggggagcccctttacgctacagctg
gagcagatagggcattggccccgcccacgggtagtttggtgtgctgccgaggagacgccg
gagcccttgatagagctggtgaaacaattgaatcaagggctgacggcatgtggttatcag
cccgagactcggccttaccgggcccatatgactctggcgcgtaaggtggccgggcgtttt
cccaccactcgggtggcgcccctggtctggcaggttgaccatttttgtctggtgcagtca
gtgacccatcctagtggggttcagtaccaagtgttgcgtacttggcctttagtgatatga
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