KEGG   Nitrosococcus halophilus: Nhal_1943
Entry
Nhal_1943         CDS       T01198                                 
Name
(GenBank) CRISPR-associated protein, Csd1 family
  KO
K19117  CRISPR-associated protein Csd1
Organism
nhl  Nitrosococcus halophilus
Brite
KEGG Orthology (KO) [BR:nhl00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:nhl02048]
    Nhal_1943
Prokaryotic defense system [BR:nhl02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-C factors
    Nhal_1943
SSDB
Motif
Pfam: Cas_Csd1
Other DBs
NCBI-ProteinID: ADE15051
UniProt: D5C3S9
LinkDB
Position
2005550..2007298
AA seq 582 aa
MILQALSEYYQRKTREGGNELPPIGFEKKEIPFIVVLDEEGRFVDLEDTRTGKGKKKTGR
IFIVPQGEKRTSGILPNLLWDTLDYALGTVSAVKAERLEANKREKEQQRAKEKRAAFIQR
IKDTFPEVGADKGIKAVLAFLEKGDFQSLYAHSLWDDINRSTGNLSFRLQNSTELICQRN
AVRRAIVEWVTERKKQRQRCLVSGEVDSIARVHPPIRGVWGGQPSGADIVSFNRDAFTSY
GKHQGINAPVGERATFAYTTALNHLLRKGSRQRIQVGDASTVFWAAKDHPSEEQFVAWLD
PDPDDPDRGTEAIRALYAAPKSGAKPIDEDNTPFYVLGLAPNAARIAVRFWYPGTVGEVA
RHIRQHFNDTHIIHAPQEPEFLPLFRLLKASALQGKVENVPPNLAGDFMKAILVGMPYPR
TLLAAALRRVRAEHHITYPRVALIKAVLTRNARLFNHSQQEVNVALDLKNLNIGYRLGRL
FAVLERAQKLALPNVEATIRDRFYSAASSTPRTAFPHLLKLKNYHLDKLEEGQIIWLEKL
MGEIMDGIEYFPAHLSLDDQGRFAVGYYHQRQAFFNKKNLDN
NT seq 1749 nt   +upstreamnt  +downstreamnt
atgatcttgcaggcgcttagtgaatattaccagcgcaaaacccgtgagggtggtaatgaa
ctgcctccgatagggttcgagaagaaggagattcctttcattgtcgtgctggacgaagaa
gggcgttttgtagacttggaggatacccggacggggaagggaaaaaagaaaaccgggcgg
atatttattgttcctcagggggagaagagaacttcagggattctgcctaatttattatgg
gatactctcgattatgcgttaggcacggttagtgctgtaaaagctgaaagacttgaggct
aacaagcgggaaaaggagcaacagcgggcaaaggaaaaacgggcggcatttatccaacgt
attaaagatacctttcccgaggtgggtgctgataaggggataaaggctgtattggccttt
ctggaaaagggcgattttcaatctttatatgcccactctctttgggatgacattaatagg
agcacgggtaacctctcctttcgcctgcaaaatagtacggaacttatttgccaacgaaat
gctgtgcggcgggctatcgtcgagtgggtgacagagcgcaagaaacaacgccagcgttgt
ctggttagcggtgaggtggacagcatcgctcgagttcaccctcccatcagaggcgtttgg
gggggacaaccttcaggtgcggatatcgtttctttcaatcgggatgctttcacgtcctac
ggtaagcaccaaggaattaatgcaccggtgggcgaacgggctacctttgcctacactacc
gctttgaatcatctactgcgcaaaggatcgcgccagcgaattcaggtaggggatgcttcc
actgtcttttgggcggcaaaggatcatccttcagaggagcaatttgtagcttggctggat
cccgacccagatgatccagatcggggcacagaggctattcgtgctctttatgccgcccct
aaaagcggggccaagccaattgatgaagataacacccctttttatgtgctgggcctagcc
cccaacgccgcacgtatcgccgtccgcttctggtatccgggcaccgtgggcgaagtagcc
cggcatatacgccagcatttcaatgatacccatatcatccatgcaccccaggagccggaa
tttctgccgttattccgcttgctgaaggcaagcgctttacagggcaaagttgaaaatgtt
cctcctaatttggctggcgatttcatgaaggcgattctggtaggtatgccttatccgcga
accttgctagcggctgctcttcgccgagttagggcggagcaccatattacttatcctcga
gttgctttgattaaggcagtgttaacccgtaatgcccggttatttaatcattcccaacag
gaggtcaatgtggctttggatttgaaaaatttgaacatcggttatcggctaggacggttg
ttcgccgtgctagaacgagcccagaagctcgctctccccaacgttgaagccactatccgg
gatcgtttttacagcgccgcttcctcaacgcctaggacggcttttcctcacctgttaaag
cttaagaactaccacctcgataagttggaagagggacaaatcatttggttggaaaaattg
atgggtgaaatcatggacggcattgaatattttcctgcccatttgagtttggacgatcaa
ggccgctttgctgtgggttattaccaccaacgtcaggcatttttcaataaaaagaattta
gataactaa

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