KEGG   Natronomonas halophila: HWV23_16560
Entry
HWV23_16560       CDS       T07279                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nho  Natronomonas halophila
Pathway
nho03030  DNA replication
nho03410  Base excision repair
nho03420  Nucleotide excision repair
nho03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HWV23_16560
   03410 Base excision repair
    HWV23_16560
   03420 Nucleotide excision repair
    HWV23_16560
   03430 Mismatch repair
    HWV23_16560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nho03032]
    HWV23_16560
   03400 DNA repair and recombination proteins [BR:nho03400]
    HWV23_16560
Enzymes [BR:nho01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HWV23_16560
    6.5.1.6  DNA ligase (ATP or NAD+)
     HWV23_16560
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HWV23_16560
DNA replication proteins [BR:nho03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HWV23_16560
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HWV23_16560
DNA repair and recombination proteins [BR:nho03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HWV23_16560
   NER (nucleotide excision repair)
    Other NER factors
     HWV23_16560
   MMR (mismatch excision repair)
    Other MMR factors
     HWV23_16560
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLD87264
LinkDB
Position
3123191..3124843
AA seq 550 aa
MEFAEFAVRAAEMEEEPADLETIGLVAELFEDAGEDLAIVTRFVQGRVFPAHDGTKLDIG
PNLCYGALAKAAGQNVSADDIEDRLAEVGEIGAVAEELDLGGQQGLAAFGGGGSDALTVA
EVDDTLRSLAAAAGSGSTDTKLDTLFGLFNRAEPQEARFLARLVLGEMRVGVGEGTVRDA
IAEAFDVPTDAVERAIQVSNDCGLVAETARDEGEDGLADVHLEVGRPVQAMLAQAGTAVD
ALEEWEEAAVETKYDGARVQVHHDGETTQLFSRNLEDVTDPLPEVVEFVDDELDVPAILD
GEVVAVDEEGEPLPFQEILRRFRRKHDVAAAREDVAVELHAFDCLHADGDDLLDAPLVER
HDRLSGLLSEGVSELVVTDDADEIADLEADALEAGHEGIMLKNPESTYTPGNRGKNWLKR
KPDVETLDLVVTGAEWGEGRRANLLGTFLLSARDGDDYETIGKVATGITDEKLEELDGLL
EPHIRSESGTEVDIAPKIVFEVGYEEIQRSPTYSSGYALRFPRFVGVREDKNPANADSLD
RVERLAEAQR
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggaattcgccgagttcgccgtccgtgccgccgagatggaggaagagcctgcggacctc
gaaaccatcggcttggtcgccgagttgttcgaggacgcgggcgaggacctcgctatcgtg
acgcggttcgttcaggggcgcgtgtttccggcccacgacggcacgaaactcgatatcggt
ccgaacctctgctatggggcgctggcgaaggctgccgggcagaacgtctcggccgacgat
atcgaggaccgactggcagaggtcggcgaaatcggcgcggtcgcggaggaactcgatttg
ggaggccagcagggcctcgccgccttcggtggtggcggcagcgatgccctgaccgtcgcc
gaagtggacgacacgctccggagtctcgccgccgctgcgggctcgggcagtacggatacc
aaactcgatacgctgttcggcctgttcaaccgcgccgaaccgcaggaagcgcgcttcctc
gcccgactcgtcttgggcgagatgcgcgtcggcgtcggcgaggggacggttcgcgacgcg
atagcggaggccttcgacgtaccgaccgacgccgtcgaacgcgcgattcaggtatcgaac
gactgcggcctcgtcgccgaaaccgctcgcgatgagggcgaagatggactggcggacgtt
cacctcgaagtcggccggccggttcaggccatgctcgcgcaggctggcaccgctgtcgac
gccctcgaagaatgggaggaagccgccgtcgagaccaaatacgacggcgcccgcgtgcag
gtccaccacgacggcgaaacgacgcaactcttctcgcgaaacctcgaggacgtgaccgac
ccgctgcccgaagtcgtggagttcgtcgacgacgaactcgacgtgcccgcaattttagac
ggcgaagtcgtcgccgtcgacgaggagggcgaacccctgccgtttcaggaaatcctccgg
cgcttccgtcggaaacacgacgtggcggcggcccgcgaggacgtggcggtcgaactgcac
gccttcgactgtctgcacgccgacggcgacgacctgctggacgcaccgctggtcgagcgg
cacgaccgactgtcgggcctgctgtcggagggcgtctccgaactcgtcgtcacggacgac
gccgacgaaatcgcggatctggaagccgatgcgctggaggcgggccacgagggcatcatg
ctcaaaaaccccgagtcgacctatacgccgggcaaccgcgggaagaactggctgaagcgc
aaacccgacgtcgaaacgctcgatttggtcgtcaccggcgccgagtggggcgaaggccgc
cgagcgaacctgctcgggacgttcctgctttcggcccgcgacggcgacgactacgagact
atcggcaaggtggcgacgggaatcaccgacgagaaactcgaagagttagacgggttgctg
gaaccgcacatacgttcggaatcaggcaccgaggtagacatcgctcccaaaatcgtcttc
gaggtaggctacgaggaaatccagcggtcgccgacctattcgtcggggtacgcgcttcgc
tttccccgatttgtcggcgtcagggaggacaagaacccggccaacgccgacagtctcgac
cgcgtcgagcgactggccgaggcccagcgctaa

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