Nocardia huaxiensis: H0264_05025
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Entry
H0264_05025 CDS
T07784
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nhu
Nocardia huaxiensis
Pathway
nhu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H0264_05025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhu03400
]
H0264_05025
Enzymes [BR:
nhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H0264_05025
DNA repair and recombination proteins [BR:
nhu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H0264_05025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QLY31688
UniProt:
A0A7D6ZBV4
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All DBs
Position
1086747..1089041
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AA seq
764 aa
AA seq
DB search
MGSRRSFGGVEVGLTNLDKVLYPATGTTKGEVIDYFTAIAPALLPHVAQRPVTRKRWPNG
VEEASFFEKNLPDHAPKWLERRTIEHSDRTVVYPLIDSEAGMAWLGQQAALELHVPQWRF
DGAEMGAITRLVFDLDPGPGAGLPQCAEVALILRDVVREVGLEAYPVTSGSKGIHVYVRL
DRELGPNGASAIAKQVATSLEKLHPKLVTANMAKSARTNKVFLDWSQNNTAKTTIAPYSL
RGRAEPWVAAPRSWDEIEKRKKLRHLHFDEVLRRWQEHGDLLAELDEPLEQSEPEQADSP
AAEPDRLDTYRAKRDAKKTPEPVPAAPPAPSAGNRYVVQEHRARRLHWDVRLERDGVLVS
WAVPKGPPTDTHENRLAVHTEDHPLEYLDFHGTIPKGEYGAGDMTIWDSGTYETEKWRDD
EVIVRFRGERLDGRYALIQTNGNQWLMHLMKDQSQPETTGAHTYSSSNGDAPFPHGLSPM
LATPGDVSTLTGDDWAFETKWDGFRLIAEIEDGAVTLHSRAGHVVTGRYPGVASLGEELS
EHRVVLDGEAVVFDDHGGANLGLLRADSNNAVFVAFDILYLDGTSLVRKRYEDRRRVLEA
LAARAPSLEVPARLEGSGAEALRFSQENGMEGVVAKRRDSVYLPGKRGQSWIKTRNWRTL
QVVVGGYRSSQVRQFASLLVGVPHEGQLYYLGRVGTGFSEQEMSELATRLHRLERKTSPF
GNELTAEERKEAVWVSPKLTGTVRFMNWTEVGRLWHPAWIPASD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggggtcccggcggagtttcgggggtgtcgaggttgggctgaccaacctcgacaaggtg
ctgtatcccgccaccggcaccaccaagggcgaggtcatcgactatttcacggccatcgcg
ccggcgctgctgccgcatgtggcgcagcggccggtgacgcgcaaacgctggccgaacggg
gtggaggaagcctccttcttcgagaagaacctgcccgatcacgccccgaagtggctggag
cgccgcaccattgagcattccgaccggacggtggtgtacccgctcatcgactcggaagcg
ggcatggcgtggctcgggcagcaggcggcgctggaactgcatgtgccgcaatggcgtttc
gacggcgcggaaatgggggcgatcacccggctggtcttcgacctcgaccccgggccgggc
gccgggctgccacagtgcgcggaggtggcgctgatcctgcgggatgtggtgcgcgaggtg
gggctggaggcgtatccggtcaccagcggcagcaaagggattcacgtctacgtgcggctg
gatcgcgagctcgggccgaacggggcgtcggccatcgccaagcaggtggccaccagcctg
gaaaaactgcatcccaagctggtgacggccaatatggcgaaatccgcgcgcaccaacaag
gtcttcctggactggagccagaacaacaccgccaagaccaccatcgcgccgtactcgctg
cgcggccgcgccgaaccctgggtggcggccccgcgcagctgggacgagatcgagaagcgg
aagaagctgcggcacttgcacttcgatgaggtgctgcggcggtggcaggaacacggtgat
ctgctggcggaattggatgagccgctggaacaatcggagccggagcaggcggattcgcct
gcggccgaaccggatcgcctcgacacctaccgcgccaagcgggacgcgaagaagacgccg
gagcccgtacccgccgccccgcccgcgccgagcgccgggaatcgctatgtggtgcaggag
catcgggcgcgccggttgcactgggatgtgcggctggaacgcgacggcgtcctggtgtcc
tgggcggtgcccaagggcccgcccaccgacacccacgagaaccggctggcggtgcacacc
gaggaccacccgctggaatacctggacttccacggcacgattcccaagggggagtacggc
gccggggacatgaccatctgggattcgggcacctacgagaccgagaagtggcgcgacgac
gaggtcatcgtgcgcttccgcggcgagcggctggacgggcggtacgcgctcatccagacc
aatggcaatcagtggctcatgcatctgatgaaggatcagtcgcagcccgaaaccactggt
gcgcacacttattcgtcctcgaacggcgatgcgcccttcccgcacggcctcagccccatg
ctcgccacacccggcgatgtctccacgctcaccggcgacgactgggccttcgaaaccaaa
tgggacgggttccggctgatcgccgaaatcgaagacggcgcggtgactttgcacagtcgc
gccgggcatgtggtgacgggccggtaccccggcgtcgcgagcctgggggaggagctgtcc
gagcatcgcgtcgtcctcgacggtgaagccgtggtgttcgacgatcacggcggcgcgaat
ctcggcctgctgcgggcggattcgaacaatgccgtcttcgtcgccttcgacatcctgtat
ctcgacggcacttcgctggtgcgcaaacgctacgaggaccggcggcgggtgctggaggcg
ctggccgcccgcgcgccctcactggaagttcctgcgcgcctggaaggttcgggcgcggag
gcgctgcgcttcagccaggagaacggcatggagggcgtggtcgccaaacgccgcgactcg
gtgtacctgccgggcaagcgcggtcagtcctggatcaagacccgcaattggcgcacgcta
caggtggtcgtcggcggctaccgcagttcccaggtccgccagttcgcctcgctgctcgtg
ggcgtcccgcacgagggtcagctgtactacctgggccgggtcggcaccggtttcagcgag
caggagatgagcgagctggccacccgactgcatcgcctggagcgcaagaccagcccgttc
ggcaatgagctcaccgccgaggagcgcaaggaggcggtgtgggtgtcgcccaagctcacc
ggcaccgtgcgcttcatgaactggaccgaggtcggacgcctgtggcatccggcgtggatt
ccggcctcggactga
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