Nocardia huaxiensis: H0264_10295
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Entry
H0264_10295 CDS
T07784
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nhu
Nocardia huaxiensis
Pathway
nhu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H0264_10295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhu03400
]
H0264_10295 (mfd)
Enzymes [BR:
nhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H0264_10295 (mfd)
DNA repair and recombination proteins [BR:
nhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H0264_10295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
AAA_22
RecG_dom3_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QLY32588
UniProt:
A0A7D6ZD34
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All DBs
Position
2317959..2321576
Genome browser
AA seq
1205 aa
AA seq
DB search
MPTHRPPLAGLAAVAGADTALRQVTNLIGRDSAMLVAPSAVRPFVAASIAGQKPLVVVTA
TGREADDLTVELTEILGDTVALFPSWETLPHERLSPGADTVGKRLQVLRRLAHPQDPVHP
EPLRVVVTTVRSLMQPMARGLGDIEPIVLRAGAEFDFDELLTRLVEFAYERVDMVGKRGE
FAVRGGILDLFPSTADHPVRVEFWGDEVSELRAFSIADQRSITDVPVDLVVAQPCRELLL
TNDLRETAAQVAAENPADAALVEMLEKIAQGIPVEGMEALLPVLQPGELQLLTDVLPAET
HVLLCDPEKIRTRAADLVRTGQEFLEASWTAASFGGAAPLGAHGLDLAASSYRGLDVVHA
DAEKRGLPWWTLSPLAADDPDEIVLPVLSAPSARGSEELVATIFASLRAHVSTGGRAVIV
VAGHGTAHRILERLADAEVPAAELEAGAEPVRGLVGVLCGSLHDGIVFDDAKLVVIAESD
LTGNRVTAPGEGKKLPARRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLFVPMDSLDQLSRYVGGEMPSLSKLGGSDWQNTKRKARKAVREIA
TELVQLYAARQAAPGHAFGPDTPWQQEMEDAFAFTETADQLSAIAEVKADMEKPVPMDRV
VCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERMAGFPVTVKGLSR
FTDAAESREILEGMAAGDVDIVVGTHRLIQTGVRWKDLGLVIVDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGAYNDKQVAAAVRRE
LLRDGQVFYVHNRVASIDKAAKRIRDLVPEARVVVAHGQMNEDMLEKTVQGFWEREFDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITVDEEVKEVRIDLPVDAHIPPDYIASDRLRLEGYRKLATAQDDSALAAVV
EEFVDRYGPLPVEVGRLVSVAKLRLLAREYGLTEIGVTGTTLKVSPLQLPDSKQLRLKRL
YPNATYRAATGIVQLPLPRVEDSVGAARVRDVQLLQFVADLLLALDGKAPGAVDIRVETE
VTAAR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgcatcgtccacctctggcgggactggccgcggtggccggtgccgataccgct
ctgcggcaggtcacgaacctgatcgggcgcgattcggccatgctcgtcgcaccctcggcc
gtgcggccgttcgtggccgcgagcattgccgggcagaaaccgctcgtggtcgtcaccgcc
accgggcgcgaggcggatgacctgacggtcgagctcaccgagatcctcggtgacactgtt
gccctgttcccctcgtgggagacgctgccgcacgagcgcttgtcgccgggcgcggacacg
gtcggcaagcgattgcaggtgctgcggcggctggcgcatccgcaggatccggtccatccc
gagccgctgcgcgtggtcgtgaccaccgtgcgctcgctcatgcagcctatggcgcgcggg
ctgggcgatatcgaacccatcgtgctgcgcgccggggccgagttcgacttcgacgaattg
ctcacgcgcctggtggaattcgcctacgagcgggtcgacatggtcggcaagcgcggcgag
ttcgcggtgcgcggcggcatcctcgacctgttcccctccaccgcggatcatccggtgcgc
gtggagttctggggcgacgaggtgtcggagctgcgcgccttctccatcgccgatcagcgc
tccatcaccgatgtgccggtggatctcgtagtggcccagccgtgccgggaactgctgctc
accaacgaccttcgcgagaccgccgcgcaggtcgccgccgagaatccggccgacgccgcg
ctggtggagatgctggagaagatcgcccagggcatcccggtcgagggcatggaagccctg
ctgccggtgctgcagcccggcgagctgcaactgctcaccgatgtgctgcccgcggaaacc
catgtgctgctgtgcgatccggagaagatccgcacccgcgccgccgacctggtgcgcacc
gggcaggaattcctggaagcctcgtggacggcggcctccttcggcggggccgcgccgctg
ggcgcgcacggcctggatctggccgcctcctcctatcgcggcctggatgtggtgcacgcc
gatgcggagaagcgcggcctgccctggtggacgctgagcccgctggccgccgacgacccg
gacgagatcgtgctgccggtgctgtccgcaccctcggcgcgtgggtccgaggaactggtc
gccaccatcttcgcgtcgctgcgcgcacacgtctccaccggtggccgcgcggtcatcgtg
gtggcggggcacggtacggcacaccgcattctggaacggctcgccgatgccgaggtgccg
gcggccgagctcgaggccggtgcggaaccggtgcgcgggctggtcggcgtgctgtgcggt
tcgctgcacgacggcatcgtgttcgacgacgccaagctcgtcgtcatcgccgaatccgat
ctgacgggtaaccgcgtcaccgcgccgggcgagggcaagaagctacccgcgcgcaggcgc
aatcaggtcgatccgctggcgctgagcgccggtgacatggtcgtgcacgatcagcacggc
atcggccgcttcgtggagatgattgagcgcaccgtcggcggcgcgcgccgcgaatacctg
gtcatcgagtacgcgcccagcaagcgcggccagccgggcgaccggttgttcgtgcccatg
gactccctcgatcagctctcccgctatgtgggcggtgagatgccgagcctgtccaagctc
ggcggctccgactggcagaacacgaaacgcaaggcgcgcaaggccgttcgtgagatcgcc
accgaactcgtgcagctctacgctgcccggcaggccgcgcccggtcacgccttcggcccg
gacaccccgtggcagcaggagatggaggacgcgttcgccttcaccgagaccgccgatcag
ctctccgccatcgccgaggtgaaggccgatatggagaaaccggtcccgatggaccgcgtc
gtctgcggtgatgtcggctacggcaagaccgagatcgcggtgcgcgccgccttcaaggcc
gtgcaggacggcaagcaggtcgtggtgctggtgccgacaaccctgctggcacaacagcat
ctgcagaccttcaccgagcgcatggccggattcccggtgaccgtgaaggggctgtcccgc
ttcaccgacgccgccgaatcccgcgagatcctcgagggcatggccgcgggtgacgtggac
atcgtggtcggcacgcaccggctgatccagaccggcgtgcgctggaaggatctcggcctg
gtcatcgtcgacgaggagcagcgcttcggtgtcgagcacaaggagcacatcaaggcgctg
cgcacccacgtggacgtgctcaccatgtccgccacgccgattccgcgcaccctggagatg
agcctggcgggcattcgcgaaatgtcgaccatcctcactccgcccgaggagcggcatccg
atcctcacctatgtgggcgcctacaacgacaaacaggtcgccgcggccgtgcgtcgtgag
ctgctacgcgacggccaggtgttctacgtgcacaatcgtgtcgcctcgatcgacaaggcg
gccaagcggattcgcgatctggtgcccgaggcgcgggtggtggtcgcgcacggccagatg
aacgaggacatgctggagaagaccgtccagggtttctgggagcgggaattcgacgtgctg
gtctgcaccaccatcatcgagaccggcctcgacatctccaatgccaatacgctgatcgtg
gaacgcgccgacgccctgggcctttcgcagctgcaccagctgcgcggccgcgtcgggcgc
agtcgcgaacgcggatacgcctacttcctgtacccgccggaaaagccgctcaccgaaacg
gcttacgaccgtctggccaccatctcccagaactccgatctgggtgcgggtatggccgtc
gccatgaaggacctcgaaatccgcggcgccggaaacgtgctcggcgcggagcagtccggc
catgtcgcgggcgtcggcttcgacctgtacgtgcgcctggtcggcgaggccgtggaagcc
taccgcgccgccgccgacggccgtcccatcaccgtggacgaggaggtcaaggaggtccgc
atcgacctcccggtcgacgcgcacatcccgcccgactacatcgcctccgaccgcctgcgc
ctggagggctaccgcaaactggccaccgcccaggacgattcggccctggccgccgtggtg
gaggagttcgtcgaccgctacggcccgctgccggtcgaggtgggtcgcctggtctcggtg
gcgaagctgcgcctgctggcccgcgaatacggcctcaccgaaatcggcgtcaccggaacc
acattgaaggtgtccccgctgcaactgcccgactccaagcagttgcgcctcaaacgcctc
tacccgaatgccacctaccgcgccgccaccggcatcgtgcaactcccgctgccccgcgtg
gaagacagcgtcggcgcggcgcgcgtccgcgacgtccaactgctccagttcgtggccgac
ctcctgctcgccctggacggcaaagcccccggcgcggtggacattcgagtggaaaccgag
gtgaccgccgcccgatga
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