Niabella ginsenosidivorans: A8C56_12060
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Entry
A8C56_12060 CDS
T04418
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nia
Niabella ginsenosidivorans
Pathway
nia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A8C56_12060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nia03400
]
A8C56_12060
Enzymes [BR:
nia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A8C56_12060
DNA repair and recombination proteins [BR:
nia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A8C56_12060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ANH81613
UniProt:
A0A1A9I261
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Position
2898014..2900581
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AA seq
855 aa
AA seq
DB search
MATLKKYKEKRNFGQTREPKAKIQSARSTQLRFVVQRHAATRLHYDFRLEMEGVLKSWAV
PKGPSMNPADKRLAMMVEDHPYDYRTFEGTIPEGNYGAGEVEIWDEGTYEALQKESRKKE
ETVLLEELKNGSLKFILHGKKLKGEFALVRMKTAQDSNAWLLIKHRDAFATSEKYDAEAL
TAKTSRVTKAVENKKTEKKNPGKKIRINNTVPDLSGTRKYTRYIKPMLASLKKDNQPFSD
KDWVFEIKWDGYRAIAELTDHFRLYSRNGLNFEKRYAPVAEALKKQQHEMILDGEIVAYN
DKGMPNFQALQLYQEQPGTPLVYQVFDLLYLNGHSTELLTLLERKELLKKALKQNDIIKY
CDHVVQDGTRFFKELVKADLEGMIAKKADSTYTEGRRSTEWLKIKYHNIEEVVIAGYTAP
RGSRSKFGALILGRYKEGRLLYAGHTGTGFNEVSLQELFKKMQPLVISKSPFAIAPKTNM
PATWLRPKLVGVIKYSELTKDGIFRHPVFEGLREDKPAKEVVITPNTINMPASKTTPEKQ
ESKPRTAPAAKGNAQDQTVKLNGHEVKLTHQQKIYWPEEGYTKGDLIGYYNNIYRFILPY
LKSRPESMNRFPNGIAGESFYQKDIGASVPDWLHTVPVFSESNQKEIHYVVCNDRASLLY
LANLGCIEFNPWNSTVQKLDFPTYMIIDIDPSEKNNFDQVIDTALAAKQVLDECGAVSYC
KTSGASGMHVHVPLNNQYSYDQVKDFAHLIAIKITELLPDSTTLERNLKKRGNRKIYVDY
LQNRKGQTIASAYSVRPKPGATVSTPLHWKEVKKGLHPAQFTMQTLPKRLEKLGDLFKPV
LGKGINMLKCIEQIR
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctgaagaaatataaagaaaagaggaactttggacagacccgggagcccaaa
gcaaagatacaatcagcccggagcacccagctgcgttttgtagtacagcgccatgcggct
acccggctgcactatgatttccgtctggaaatggagggagtgctcaaaagctgggctgtg
cctaaagggccatctatgaatccggcagacaaacggctggccatgatggtagaagatcat
ccttatgactaccgcacctttgaaggaaccattccggaagggaattatggcgccggcgaa
gtggaaatctgggatgagggcacttatgaagcgttgcagaaagaatcccggaaaaaagag
gagaccgttttactggaagaattaaaaaacggatcgcttaaattcatcctgcatggcaaa
aagctgaagggtgaatttgcactggtacgcatgaaaaccgcacaggacagtaatgcctgg
ctgctgatcaagcacagggatgcattcgctaccagtgaaaaatatgatgcagaagctctt
acggcaaaaacctccagagtaacaaaggcagtcgagaataaaaagactgaaaaaaaaaat
ccaggaaaaaagatccggataaataacacggtaccagatctttccggtacccgtaaatat
acccggtatataaaaccgatgctggccagcctcaaaaaagataaccagcctttttcagat
aaagactgggtctttgagatcaaatgggacggataccgcgccatagcagaactaacggat
cactttcgcctgtattcccgtaacggcctcaactttgaaaaacgctatgcaccggttgca
gaagccttgaaaaagcagcagcatgaaatgatcctggacggagaaattgtagcttataat
gataaaggaatgcccaactttcaggccctgcaactctaccaggaacagcccggtactcct
ttggtgtatcaggtatttgatcttttatatctgaacgggcacagtaccgagttgcttaca
ctgctggaaagaaaagagctgctgaaaaaggcgcttaagcaaaatgatattataaaatac
tgcgatcatgtggtacaggacggaacccgtttttttaaagaactggtgaaggcagatctt
gaaggaatgattgctaaaaaagcagatagtacctatacggaaggaaggcgcagtaccgaa
tggctgaaaataaaatatcataacatagaagaagtagttattgcaggatataccgcaccc
aggggcagccgcagcaaatttggtgctttgatcctgggcaggtataaggaaggccgtctc
ctgtatgccggccataccggaacagggtttaacgaggtctctttacaggaattattcaaa
aaaatgcagcccctggtcatcagtaaatcgccctttgcaattgctccaaagaccaatatg
cccgcaacctggctgcgacccaaactggtaggcgttattaaatattcggaactgaccaag
gatggcattttccggcacccggtctttgaagggctgagggaagataaacctgcgaaagaa
gttgttattaccccaaatacgataaacatgccagcatcaaaaacgactccggaaaaacag
gaaagcaaaccgcgtactgcccctgctgcaaagggaaatgcgcaggatcagacagtaaaa
ctgaacggtcacgaagtaaagctaacccaccagcaaaaaatttactggccggaagagggc
tataccaagggggacctgatcggctactataacaatatataccgttttatactgccctat
cttaaaagcaggccggaaagtatgaaccggttccccaacgggattgccggggaaagcttc
tatcagaaagatataggagcgtcggtaccggattggctgcacacggttcctgtcttttct
gaaagtaatcaaaaagagatccattatgttgtctgtaatgaccgggcttcactattgtac
ctggccaatctggggtgcattgaattcaatccctggaacagcaccgtacaaaaactggac
tttcctacctatatgattattgacatcgacccctcagaaaaaaacaattttgaccaggtc
atcgatacagcacttgctgcaaaacaggtgctggatgaatgcggggctgtatcctattgc
aaaacatcaggtgcttcgggcatgcacgtgcatgtaccactgaataaccaatacagttac
gatcaggtaaaggattttgcacatttaattgccattaagatcacggaattattaccggac
agtaccacactggagcggaacctgaaaaaaagaggcaaccggaaaatatatgttgattat
ttacagaaccggaaaggccaaaccattgccagtgcctatagcgtacgtcccaaaccgggg
gcaacagtttccactcccttacactggaaagaagtaaaaaaaggcctgcatcctgcacaa
tttaccatgcaaaccctgcctaaacggctggaaaagctgggagacctgttcaagccggtt
ttaggcaaaggcatcaatatgctaaaatgcattgaacagatccggtaa
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