Niabella ginsenosidivorans: A8C56_21105
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Entry
A8C56_21105 CDS
T04418
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nia
Niabella ginsenosidivorans
Pathway
nia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8C56_21105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nia03021
]
A8C56_21105
03019 Messenger RNA biogenesis [BR:
nia03019
]
A8C56_21105
Transcription machinery [BR:
nia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A8C56_21105
Messenger RNA biogenesis [BR:
nia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A8C56_21105
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
AAA_22
AAA_25
RNA_polI_A34
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
ANH83146
UniProt:
A0A1A9I6A8
LinkDB
All DBs
Position
complement(5006845..5008557)
Genome browser
AA seq
570 aa
AA seq
DB search
MYDILQLNDMLVPELLDIAEQLKIPNAKKLNKQDLIYKILDSQAVTGSKTAATDRPKRKR
IVKATTSIGTEEAFVEEDGKEEKDSEAAEKTAKAPAKKKKTPAKKKKETKEEKEEKAKEE
EKSVKPKKAEPVEAAENAPEEEGTVFKTDAATEAFILQALKATEKYDAPVVAPVEDIEYP
IENKVYAPKKDLNPSFNVEFDGVILSEGVLEMMPDGYGFLRSSDYNYLSSPDDVYVSPSQ
IKLFGLKTGDTIHGAVRPPKEGEKYFALLKVDTINGKKPDEVRDRIPFDYLTPLFPYEKL
NLFTRPSDLSTRIIDLFTPIGKGQRGLIVAQPKTGKTMLLKAVANAIAENHPECYLMIVL
VDERPEEVTDMERSVKAEVIASTFDEPAEKHVKVSTVALQKAKRLVECGHDVVILLDSIT
RLARAHNTVSPASGKVLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMD
EVIFEEFKGTGNMELQLDRRLSNKRIYPAIDLTASSTRRDDLLLDRDVLQRMNLLRVYLA
DMKTEEAMQELLKRMKGTKSNEEFLASMNS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattttacaattgaacgatatgctcgttcctgaactgttagacattgctgaa
cagttgaaaattccaaatgccaaaaaactgaacaaacaggacctgatttataaaattctt
gacagtcaggctgttaccggttcaaaaactgccgctaccgatcgtccgaaaagaaaaaga
attgtaaaagcaaccacatctatcggaactgaagaagcttttgttgaggaagacggcaag
gaggaaaaggattctgaagcggcagaaaaaacggcaaaagccccggccaaaaagaaaaag
accccggctaaaaagaaaaaagaaacgaaagaagaaaaggaagaaaaagcaaaagaagaa
gaaaaaagcgtaaaacctaaaaaggctgaaccagtggaagccgctgaaaacgccccggaa
gaagaaggaactgtatttaaaacagacgctgcaactgaagcttttatcttacaggcatta
aaggctactgaaaaatacgatgcccctgtggtagccccggttgaagacatcgaatatccc
attgaaaacaaggtttatgcccctaaaaaagatctgaatccttcttttaatgtagaattt
gacggggtgatcctgagtgagggagttttggaaatgatgcctgacggctatggcttttta
aggtcttctgattacaattatctttccagtccggatgatgtgtatgtttctccttcccag
ataaaactattcggattaaagaccggtgatacgattcatggagcggtgcgtcctccgaaa
gaaggcgaaaaatattttgcactactcaaggtggatactattaatggtaaaaaaccggat
gaggtaagggaccggattccgtttgattacctcacccctttattcccttacgaaaaatta
aacctgtttaccaggccatcagatttatctacccggatcattgacctgtttacacctatc
ggtaaaggtcagcgcggtctgattgtggcgcaacctaaaaccggtaaaaccatgttgcta
aaagctgtggcaaacgccattgctgagaaccacccggaatgttacctgatgattgtactg
gtagacgagcgaccggaagaggttacagatatggagcgcagcgtaaaagcagaagtgatt
gcttctacttttgacgaaccagccgaaaaacacgttaaggtttctactgtggccttacaa
aaggcaaaacgtttggtagaatgcgggcatgatgtagtgatccttttagactccattaca
cgtctggcacgcgcccataataccgtatcacctgcatctggtaaggttttgagcggtggg
gtggaagcaaatgctatgcaaaagcccaagcagttctttggtgccgcccgtaaaattgaa
aacggcggctctttaactattttagctactgcgttaattgataccggtagcaaaatggat
gaggtgatctttgaagaatttaaaggtaccggtaatatggaattgcagttagacagaaga
ttatccaataaaaggatttatccggctattgaccttaccgcatcttctacaagaagagat
gacctgctgctggacagggatgtactgcaaagaatgaacctgctgcgtgtttacctggct
gatatgaaaactgaagaagccatgcaggaattattaaagcgtatgaagggaacaaaaagt
aatgaagaatttttggccagtatgaattcttaa
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