Niabella ginsenosidivorans: A8C56_23490
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Entry
A8C56_23490 CDS
T04418
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nia
Niabella ginsenosidivorans
Pathway
nia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8C56_23490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nia03400
]
A8C56_23490
Enzymes [BR:
nia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8C56_23490
DNA repair and recombination proteins [BR:
nia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A8C56_23490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANH83542
UniProt:
A0A1A9I9Z4
LinkDB
All DBs
Position
complement(5551594..5554989)
Genome browser
AA seq
1131 aa
AA seq
DB search
MQTEVLKNFYSEDPRCLQIANELSLLQPGHLALSGVHGSASQFIVAACMANTPKLNHVII
LNEPEDAAYFQNSLENITGALDIFYFPSSFKTARNYQLLNASHVMLRTEALTKLAGGGNK
KVLVTYADALFEKVVVSAALAENIIHLKTADQLNTEELLLKLDKYGFERTDFVYEPGQFA
LRGGILDIYSFGNDKPYRVELFGNDIDSIRIIDPETQLSERKLLQVSIIPNVDTQFVKEE
HVSLFEFLPENTAIWVQDAALCTERLKEHAENLTYFLEQQAQFAGTEPDQYPETDKLVKK
NVNREDFIEAVDFEEALQSRPVVHLERLPGTVTQEFEFHTKEQPAFNRQFELLIKDLKAH
ETTGYALYIFSENPKQLQRLQSIFDDQEADLVFNPVAAAIHSGFTDQDLKILCYTDHEIF
QRYHKYKVKQAYNKNKAITLRTLRELQPGDFVTHMDHGVGIYSGLQKMDINGKTQEAVRI
LYKDSDILYVNINSLHKIAKYTGKDGSVPRVNKLGSDAWNRLKEKTKTRVKEIAFDLIQL
YAQRKAQKGFAHTPDNYMQTELEASFIYEDTPDQSKASADVKKDMESGSPMDRLVCGDVG
FGKTEIAIRAAFKTCVDGKQAAVLVPTTILAFQHFKTFSDRLKEFPVTVDYLNRFKSSKE
KKETLQRLAEGKIDILIGTHGLLGKEVKFKDLGLLIIDEEQKFGVAHKEKIKVLRSTIDC
LTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVLIYNEDAIRDAIYFETERGGQ
VFFIHNRVAGLSEMAAMIQGLCPDLSVSYAHGQMEGAKLEEKILDFIDHRYDVLVCTNIV
ESGVDIPNVNTIIVNNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPADSRKRLQ
TLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFETYQKILDEAIRELKRTQF
KELFKEEISRQDDFVTDCTIDTDLEILIPDDYVESITERLSLYQRLDNSESEEELAELYT
ELQDRFGPVPVPVNDLFETIKCRRLAVELGFEKMTLKNETLRCHFINRPDSPYFESGVFQ
KIIQYVQTGTNKARLKQTGKLFLLVAAPIPSMQALYAFLKEMHAFCTAETI
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacggaagtgttgaagaatttttatagtgaagacccccgctgtttacaaatagcg
aacgaactttctttgcttcaacccggccatctggccctttccggtgtacatggcagcgcc
tcccagtttatcgtagccgcctgtatggccaatacgccaaagctcaaccacgttattatt
ctgaacgaaccggaagacgcggcatattttcagaacagcctggaaaatataaccggggca
ctcgatatattttatttcccctcttcttttaaaacagcaaggaattaccagttgctgaac
gcatcgcacgtaatgctgcgcacggaagcactgacaaaacttgccggtggcggcaataaa
aaagtgctggtgacctacgcggacgcgctgtttgaaaaagtggtcgtatccgctgcgctt
gctgaaaacatcattcatctgaaaacggcagatcagctgaacactgaggaactgctgtta
aagctggataaatacggctttgagcgcaccgattttgtgtatgagcccggacagtttgcg
ttgcggggcggtatcctggatatttattccttcgggaacgataagccctatcgcgtggag
ctgtttggtaacgacattgactccattcgtattatagaccctgaaacgcaattaagcgag
cgtaagctgcttcaggtatccattattcctaatgtggatacacagtttgtgaaagaagaa
catgtttctttatttgagttcctgccggaaaatacggctatctgggtacaggatgctgca
ctttgcacagagcggttaaaagagcatgcggaaaatttaacatatttcctggagcagcag
gcacaatttgccggaacagagccggatcaataccccgaaaccgataaactggtaaagaaa
aatgtaaaccgggaagattttattgaagctgtggattttgaagaagcgctgcaatcaaga
ccggtggtgcacctggagcgcctgccgggcactgtaacacaggaatttgaattccataca
aaagaacagccagcttttaaccgccagtttgagctgctgattaaagacctgaaggcgcat
gaaaccacagggtacgccttatatattttttctgaaaatcccaagcaattacagcggctg
caatccatttttgatgaccaggaagccgatcttgtctttaacccagtggctgccgctatt
cattcggggtttacggaccaggatctgaagatcctctgctatacagatcatgaaatattc
cagcgctatcataaatacaaagtcaagcaggcctataataagaacaaggccattacgctg
cgtaccctccgggagctgcagcccggcgattttgttacgcatatggatcatggtgtaggc
atttacagcgggctgcagaaaatggacataaacggcaaaacgcaggaggctgtacgtatc
ctttacaaagacagcgatatcctgtatgtaaacattaattccctgcataaaattgccaaa
tacacgggcaaggacggaagcgtgcccagggtaaataaattaggcagcgacgcctggaac
cgcttaaaggaaaaaacaaagacccgggttaaggaaattgcctttgaccttattcagcta
tatgcgcaacgcaaggcccagaaaggatttgcgcatacgccggacaattacatgcaaaca
gagctggaagcttcgttcatctatgaagacacgccggaccagagcaaggcatcggccgat
gtaaaaaaggacatggaatccgggtcgcccatggatcgcctggtttgcggggatgtgggc
tttggcaaaacggagatcgccatccgtgcagcctttaaaacctgtgtagacgggaaacag
gccgcagtgctggtgcccacgaccatcctggccttccagcattttaaaaccttcagcgac
cggctgaaagagtttccggttaccgtggactacctgaaccgctttaaatcttccaaagaa
aaaaaagaaaccttacagcgactggcagaaggaaagatcgatattctgataggcacgcac
ggcctcctgggcaaggaggtcaaatttaaagacctgggattactgatcatagatgaagaa
caaaagtttggcgtagcgcataaggaaaaaataaaagtgctgcgcagcaccattgattgt
ttaacgcttacggcaacgcctataccaagaacgctgcagttctccttaatgggcgcccgg
gatctgagcatcattaatacgcctccgcccaaccggcagcctattcaaacagaagtgctg
atatacaatgaggacgccatccgggatgctatttattttgaaacagaacgtggcggacag
gtattctttatccataaccgcgtggcgggattgagcgagatggccgcaatgatacagggg
ctttgccctgatctttccgtaagctatgcgcacggccagatggaaggagccaagctggaa
gagaagattctggattttattgaccatcgctatgatgtattggtttgcaccaatattgtt
gaaagcggggtggatattccgaatgtgaataccattatcgtaaacaatgcgcatcatttc
ggcctcagcgacctgcaccagctaagagggcgcgtgggccgcagcaataaaaaagctttt
tgttatttactggcgcctcccatgagcacactgcccgccgattcacgaaaacgcctgcaa
accctggagcagcacagtgagctgggaagcggcttccagattgcgatgcgggacctggac
attcgcggagcagggaacctgttaggaggggaacaaagcgggtttatggccgagatcggt
tttgaaacctaccagaagatcctggatgaagccatacgggaactaaaacgcacccaattc
aaagagctgtttaaagaagaaatcagtcgtcaggatgattttgttacggattgcaccatt
gataccgatctggagatccttataccggatgactatgtggaaagcattaccgagcgcctt
tccttataccagcgtttagacaacagcgaatcagaggaagagctggccgaactatatacg
gagctgcaggaccgttttggacctgtgcccgttcctgtgaacgatctttttgagaccatc
aaatgccgcaggctggcagtagagctgggctttgaaaagatgaccttaaaaaacgaaaca
ctgcgttgccatttcatcaaccggccagactcgccttactttgaatccggggttttccaa
aagatcattcaatatgtgcaaaccggcaccaataaggcccggttaaaacaaaccggcaaa
ctattcctgttggttgcagcccccattccatccatgcaggccctttatgcgtttttaaag
gagatgcatgcgttttgtacggcagaaacaatctaa
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