Nibribacter ruber: GU926_17365
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Entry
GU926_17365 CDS
T06388
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nib
Nibribacter ruber
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GU926_17365 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nib03400
]
GU926_17365 (ligD)
Enzymes [BR:
nib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GU926_17365 (ligD)
DNA repair and recombination proteins [BR:
nib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GU926_17365 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QHL89102
UniProt:
A0A6P1P3X7
LinkDB
All DBs
Position
4113231..4115750
Genome browser
AA seq
839 aa
AA seq
DB search
MALEEYNQKRHFKETPEPAGKPEKGKGDLRFVVHRHQASKLHYDFRLELDGVLKSWAVPK
GPSMNPADKRLAVMVEDHPFAYRTFEGDIPEGNYGAGHVDIWDQGTFHALQAANRKEGEK
QMLQELEEGSLHFVLEGEKLQGEFTLIKMKGRQEDAWLLLKKQDDFATDQTYSAEDFVEG
TAPAAKPKNQKKAATAAPEKPAGAMPMPHLIDPMTAKLTDGPFDDPAWLFEVKWDGYRAV
AEVKPNRLELYSRNGKSFKEKYQPVVEALEKLPHQAVFDGELVVLDENGKADFQALQNYQ
NTPSEHLYYYIFDLLYLDGEDLRNQPLLARKQKLEQVLSKAKDPLRYSEHRVGDGIKFFK
EAQKGQWEGIMAKAAESKYLTGKRSQDWLKIKTHLRQEAIIAGFTEPKGSRVHIGALVLA
VYEGKELKYVGQSGSGFNKQSLSELKAKLEPLVQKKSPFKEKVSLSRDVTWVKPELVCEL
SFAEWTSDGQMRQAIFEGLRVDKKAKEVIHEPTVPAEEARVEESAGKPMKSQKSGKKTED
AMVLKLNGTEVPITHPEKLYWPEEGITKGDLVQYYQTMADTILPYLKDRPESLLRNPNGI
AKPGFFQKDAGDHTPEWVETKAIKAESTGQEVDYIICQNKATLAYLNNLGCIQLNPWNSR
LQSIDRPDYLVLDLDPGENTYDQVVETALAAKEVLDDLKIPVYAKTSGATGMHLYVPLAA
KFPFEDVKELALLVAQRVHEKLPKLTSLERSPKERRHQIYLDYMQNAIAQTIAAPYCVRP
KAGATVSTPLQWKEVKKGLHPSQFTIKNVPERVEKLGDIFKPVLGEGIDAAAYLKQLKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggccttagaagaatataaccagaaaagacattttaaggagaccccagaacctgcgggc
aaaccagaaaaaggaaaaggagacctgcgcttcgtggtgcaccggcaccaggcctccaag
ctgcattatgatttcaggctggaactggacggcgtcctcaaaagctgggcggtgcccaag
ggcccttccatgaacccggcagacaagcgcctggccgtcatggtagaagaccatcccttc
gcttaccgcacctttgaaggagacattccagaaggtaattacggtgctggtcatgtagac
atctgggaccagggtacctttcacgccttgcaggcggccaaccgcaaagaaggcgaaaag
cagatgctgcaagagttggaagaaggcagtctgcattttgtgctggaaggcgaaaagctg
cagggagagttcacgctcatcaagatgaaaggccgccaggaagacgcgtggctgctgctc
aaaaagcaagatgactttgccacagatcaaacctactcggcagaagactttgtggaagga
actgctccggcggccaaacccaaaaatcagaagaaagcggccacggcagcgcccgagaag
ccagcgggcgccatgcccatgccccacctcatagaccccatgaccgccaaactcaccgat
ggcccttttgacgacccagcctggctgtttgaggtgaaatgggacggctaccgggccgtg
gcagaagtaaaacccaaccgtctggaactctactcgcgcaacggaaaatcattcaaagag
aaataccagcccgtggtagaagccttagaaaaactgccgcaccaggccgtgtttgacgga
gagttggtggtgctggatgagaacggaaaagccgattttcaggccctgcaaaattaccaa
aacacgccttcagagcatttgtactactacatctttgacctgttgtacctggacggcgaa
gacctcagaaaccaacccttgctggcacgtaagcagaaactggaacaggtcctatctaag
gccaaagatcccttgcgctacagtgaacaccgggtgggggacggcatcaaattcttcaaa
gaagcgcagaaaggccagtgggaaggcattatggccaaagccgccgagagcaagtattta
actggcaagcgctcccaggactggctcaagattaaaacccatttacggcaggaagccatc
attgccgggtttacagagcccaaaggcagccgtgtgcacattggcgcgctggtgctggcc
gtgtatgagggcaaagaacttaaatacgtgggccagagcggcagcgggttcaacaagcaa
agcctctctgagctcaaagccaaactggagccgctggtacagaaaaaatcgccgttcaaa
gagaaagtgtccctgagccgggacgtgacttgggtaaaaccagaattggtctgcgaactc
tcctttgcagaatggaccagtgacgggcagatgcgccaggccatttttgaaggacttagg
gtagacaaaaaagccaaagaggtcattcacgagcctaccgtccccgccgaagaagcccgc
gtagaggagagcgccggaaaaccaatgaaatctcagaaatcaggcaaaaaaacagaagat
gccatggtcttgaaactaaacggaacagaagtacccatcacgcacccagagaagttgtac
tggccggaagaaggcatcaccaagggagatttggtgcagtattaccaaaccatggcagac
actattctcccatacctcaaagaccggccagaatctctgctgcgcaaccccaacggcatc
gccaaacccgggtttttccagaaggatgctggggaccacacgccggaatgggtggagacc
aaagccatcaaagcagagtccacggggcaggaggtagactacatcatctgtcaaaacaaa
gccacgctggcctaccttaacaacctgggctgcattcagctcaacccttggaactcgcgc
ctgcaaagcattgaccgtccagactacctggtgctggacctggaccccggcgagaatacc
tatgaccaggtggtagagacggctctggcggccaaagaagtgctggatgacttgaagata
cccgtatacgctaaaacctccggagccacgggcatgcacttgtacgtgccgctggccgcc
aaattcccctttgaagatgtgaaagaactggcgcttttggtggcccagcgcgtgcatgag
aaattgcctaaactcaccagtctggagcgtagccccaaagagcgccgccaccaaatctac
ctggactacatgcaaaacgccattgcccagaccattgccgcgccgtactgcgtgcgccca
aaagccggggccaccgtgtctacgccgctgcaatggaaagaagtcaaaaaaggcctgcat
ccgtcgcagtttaccatcaaaaacgtaccagagcgggtagaaaagctgggagacattttt
aaaccagtgttaggcgaaggcatagacgcggccgcttacctcaaacaactaaagaaataa
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