KEGG   Nibribacter ruber: GU926_17365
Entry
GU926_17365       CDS       T06388                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nib  Nibribacter ruber
Brite
KEGG Orthology (KO) [BR:nib00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GU926_17365 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nib03400]
    GU926_17365 (ligD)
Enzymes [BR:nib01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GU926_17365 (ligD)
DNA repair and recombination proteins [BR:nib03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GU926_17365 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QHL89102
UniProt: A0A6P1P3X7
LinkDB
Position
4113231..4115750
AA seq 839 aa
MALEEYNQKRHFKETPEPAGKPEKGKGDLRFVVHRHQASKLHYDFRLELDGVLKSWAVPK
GPSMNPADKRLAVMVEDHPFAYRTFEGDIPEGNYGAGHVDIWDQGTFHALQAANRKEGEK
QMLQELEEGSLHFVLEGEKLQGEFTLIKMKGRQEDAWLLLKKQDDFATDQTYSAEDFVEG
TAPAAKPKNQKKAATAAPEKPAGAMPMPHLIDPMTAKLTDGPFDDPAWLFEVKWDGYRAV
AEVKPNRLELYSRNGKSFKEKYQPVVEALEKLPHQAVFDGELVVLDENGKADFQALQNYQ
NTPSEHLYYYIFDLLYLDGEDLRNQPLLARKQKLEQVLSKAKDPLRYSEHRVGDGIKFFK
EAQKGQWEGIMAKAAESKYLTGKRSQDWLKIKTHLRQEAIIAGFTEPKGSRVHIGALVLA
VYEGKELKYVGQSGSGFNKQSLSELKAKLEPLVQKKSPFKEKVSLSRDVTWVKPELVCEL
SFAEWTSDGQMRQAIFEGLRVDKKAKEVIHEPTVPAEEARVEESAGKPMKSQKSGKKTED
AMVLKLNGTEVPITHPEKLYWPEEGITKGDLVQYYQTMADTILPYLKDRPESLLRNPNGI
AKPGFFQKDAGDHTPEWVETKAIKAESTGQEVDYIICQNKATLAYLNNLGCIQLNPWNSR
LQSIDRPDYLVLDLDPGENTYDQVVETALAAKEVLDDLKIPVYAKTSGATGMHLYVPLAA
KFPFEDVKELALLVAQRVHEKLPKLTSLERSPKERRHQIYLDYMQNAIAQTIAAPYCVRP
KAGATVSTPLQWKEVKKGLHPSQFTIKNVPERVEKLGDIFKPVLGEGIDAAAYLKQLKK
NT seq 2520 nt   +upstreamnt  +downstreamnt
atggccttagaagaatataaccagaaaagacattttaaggagaccccagaacctgcgggc
aaaccagaaaaaggaaaaggagacctgcgcttcgtggtgcaccggcaccaggcctccaag
ctgcattatgatttcaggctggaactggacggcgtcctcaaaagctgggcggtgcccaag
ggcccttccatgaacccggcagacaagcgcctggccgtcatggtagaagaccatcccttc
gcttaccgcacctttgaaggagacattccagaaggtaattacggtgctggtcatgtagac
atctgggaccagggtacctttcacgccttgcaggcggccaaccgcaaagaaggcgaaaag
cagatgctgcaagagttggaagaaggcagtctgcattttgtgctggaaggcgaaaagctg
cagggagagttcacgctcatcaagatgaaaggccgccaggaagacgcgtggctgctgctc
aaaaagcaagatgactttgccacagatcaaacctactcggcagaagactttgtggaagga
actgctccggcggccaaacccaaaaatcagaagaaagcggccacggcagcgcccgagaag
ccagcgggcgccatgcccatgccccacctcatagaccccatgaccgccaaactcaccgat
ggcccttttgacgacccagcctggctgtttgaggtgaaatgggacggctaccgggccgtg
gcagaagtaaaacccaaccgtctggaactctactcgcgcaacggaaaatcattcaaagag
aaataccagcccgtggtagaagccttagaaaaactgccgcaccaggccgtgtttgacgga
gagttggtggtgctggatgagaacggaaaagccgattttcaggccctgcaaaattaccaa
aacacgccttcagagcatttgtactactacatctttgacctgttgtacctggacggcgaa
gacctcagaaaccaacccttgctggcacgtaagcagaaactggaacaggtcctatctaag
gccaaagatcccttgcgctacagtgaacaccgggtgggggacggcatcaaattcttcaaa
gaagcgcagaaaggccagtgggaaggcattatggccaaagccgccgagagcaagtattta
actggcaagcgctcccaggactggctcaagattaaaacccatttacggcaggaagccatc
attgccgggtttacagagcccaaaggcagccgtgtgcacattggcgcgctggtgctggcc
gtgtatgagggcaaagaacttaaatacgtgggccagagcggcagcgggttcaacaagcaa
agcctctctgagctcaaagccaaactggagccgctggtacagaaaaaatcgccgttcaaa
gagaaagtgtccctgagccgggacgtgacttgggtaaaaccagaattggtctgcgaactc
tcctttgcagaatggaccagtgacgggcagatgcgccaggccatttttgaaggacttagg
gtagacaaaaaagccaaagaggtcattcacgagcctaccgtccccgccgaagaagcccgc
gtagaggagagcgccggaaaaccaatgaaatctcagaaatcaggcaaaaaaacagaagat
gccatggtcttgaaactaaacggaacagaagtacccatcacgcacccagagaagttgtac
tggccggaagaaggcatcaccaagggagatttggtgcagtattaccaaaccatggcagac
actattctcccatacctcaaagaccggccagaatctctgctgcgcaaccccaacggcatc
gccaaacccgggtttttccagaaggatgctggggaccacacgccggaatgggtggagacc
aaagccatcaaagcagagtccacggggcaggaggtagactacatcatctgtcaaaacaaa
gccacgctggcctaccttaacaacctgggctgcattcagctcaacccttggaactcgcgc
ctgcaaagcattgaccgtccagactacctggtgctggacctggaccccggcgagaatacc
tatgaccaggtggtagagacggctctggcggccaaagaagtgctggatgacttgaagata
cccgtatacgctaaaacctccggagccacgggcatgcacttgtacgtgccgctggccgcc
aaattcccctttgaagatgtgaaagaactggcgcttttggtggcccagcgcgtgcatgag
aaattgcctaaactcaccagtctggagcgtagccccaaagagcgccgccaccaaatctac
ctggactacatgcaaaacgccattgcccagaccattgccgcgccgtactgcgtgcgccca
aaagccggggccaccgtgtctacgccgctgcaatggaaagaagtcaaaaaaggcctgcat
ccgtcgcagtttaccatcaaaaacgtaccagagcgggtagaaaagctgggagacattttt
aaaccagtgttaggcgaaggcatagacgcggccgcttacctcaaacaactaaagaaataa

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