KEGG   Nitrosarchaeum sp. AC2: DSQ20_06540
Entry
DSQ20_06540       CDS       T06694                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nic  Nitrosarchaeum sp. AC2
Pathway
nic03030  DNA replication
nic03410  Base excision repair
nic03420  Nucleotide excision repair
nic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSQ20_06540
   03410 Base excision repair
    DSQ20_06540
   03420 Nucleotide excision repair
    DSQ20_06540
   03430 Mismatch repair
    DSQ20_06540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nic03032]
    DSQ20_06540
   03400 DNA repair and recombination proteins [BR:nic03400]
    DSQ20_06540
Enzymes [BR:nic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DSQ20_06540
    6.5.1.6  DNA ligase (ATP or NAD+)
     DSQ20_06540
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DSQ20_06540
DNA replication proteins [BR:nic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DSQ20_06540
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DSQ20_06540
DNA repair and recombination proteins [BR:nic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DSQ20_06540
   NER (nucleotide excision repair)
    Other NER factors
     DSQ20_06540
   MMR (mismatch excision repair)
    Other MMR factors
     DSQ20_06540
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLH11155
UniProt: A0A7D5RKF8
LinkDB
Position
1107609..1109381
AA seq 590 aa
MEFAILADAFSKMESTTKRLELTQHLVELFEKTPQDIISRIVYLLQGKLRPDFEGVELGV
AERLAIRAIAKSAGSDSAEKKIEEEYRKSGDLGHAASKILEQKEQTTFMMQDITVERVYE
NLFTIAKLEGSKTQDRKMKYISGLLNDANPNEAKFILKILLGTLRLGVAENTVMDALAIA
FTGNKENRKALEHAYNVSSDLGKVAETIASKGLKGIEEFEINLFNPIRPMLADRVKSEEE
AIEKLGNIFAAEYKLDGERVQLHIEGEKVILFSRSLENITSYYPDIVEKIPKTIQAQKVI
LEAEAVAINENTGEFLPFQELMHRRRKYQVEKAVSQYPITVNFFDVLYYDGKSCLELPYE
ERRNLLEKIVKEDDYAKHIPMSMVKSQEDIEEFLENSINSGCEGVMLKMLDKPYQAGSRG
SYWLKLKREYRNELGDSLDLVVIGAFFGKGRRTGKYGTLLLASYDYDTDVFTSICKVGTG
FTDEDLDQLYQILSNKVTIKKNPRIDSDMEADVWFEPELVIEVVASEITLSPIHKAARNE
IRKDTGLALRFPKFTGKIRLEKDAEDASTNEEVLTLFKGQKKVAHDKNLM
NT seq 1773 nt   +upstreamnt  +downstreamnt
gtggagtttgccattctagctgatgcatttagtaaaatggagtcaactacaaaaagatta
gagctaactcaacatttagtagagttatttgaaaaaactccacaagacataatttcaaga
atcgtttatcttttacaaggaaaacttaggccagattttgaaggagtggaattaggagta
gcagaaagattagcaataagagcaattgcaaaatcggcaggctctgatagtgccgagaaa
aaaatagaggaagaatatagaaagagtggggatttaggacatgctgcatccaaaattttg
gagcaaaaagaacagacaacattcatgatgcaagacattacagttgagcgagtttatgag
aacttatttacaattgcaaagttagaaggctcaaagactcaagataggaagatgaaatac
atctcggggctgctaaatgatgcaaatccaaatgaagctaaattcatcttaaagatttta
cttggaacattaagactaggtgtagcagaaaatacagtaatggatgctcttgcaattgca
tttacaggaaataaagaaaacagaaaagcattggagcatgcatataatgtatcaagtgat
ttgggtaaagttgcagaaacaattgcaagtaaaggactcaaaggaatagaagaatttgaa
attaatttgtttaatcccatacgaccaatgcttgcagatagagtgaaaagcgaagaagag
gcaattgaaaaactaggtaatatttttgccgcagaatacaaacttgatggagaaagagtt
cagttacatatcgaaggagagaaagtaatattattttcaagaagtttagaaaatatcaca
agttattatccagacattgtagaaaaaattcctaaaacaattcaagcacaaaaagtaatt
ttagaggcagaagcagtagcaataaatgaaaacactggagaatttttacctttccaagaa
cttatgcatagaagaagaaaatatcaagtagaaaaagcagtatcacagtatccaattact
gtaaacttttttgatgtgttgtattacgatggaaaaagttgtctagaattaccatacgaa
gaaagaagaaatttgttagaaaaaattgtaaaagaagacgattatgcaaaacacatacca
atgagcatggtaaaaagtcaagaagacatagaagaatttttggaaaacagtatcaattca
ggatgtgagggagtgatgttaaagatgttagataaaccataccaagctgggtccagagga
agttactggctaaaactaaaaagagaatacagaaatgagctcggagatagtcttgatcta
gtagtaataggagcattttttggaaaaggtagaagaacaggaaagtatggaacgttactt
ttagcttcatatgattatgatacggatgtttttacaagcatatgcaaagtaggtacagga
ttcacagatgaagatttggatcaactttaccaaatattatcaaataaagtaacaataaag
aaaaacccaagaatagatagcgatatggaagctgatgtctggtttgaaccagagttagtt
attgaagttgtagcatcagaaattactttaagcccaatccataaagcagcaagaaatgaa
atcagaaaagatacaggattggcgttaagatttccaaaatttacgggaaaaataagatta
gagaaagatgccgaagacgcatcgactaatgaagaggtattgaccttattcaaaggacag
aaaaaagtagctcatgataaaaatttgatgtga

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