Nitrosopumilus piranensis: NPIRD3C_1119
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Entry
NPIRD3C_1119 CDS
T03656
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nid
Nitrosopumilus piranensis
Pathway
nid03030
DNA replication
nid03410
Base excision repair
nid03420
Nucleotide excision repair
nid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NPIRD3C_1119 (lig)
03410 Base excision repair
NPIRD3C_1119 (lig)
03420 Nucleotide excision repair
NPIRD3C_1119 (lig)
03430 Mismatch repair
NPIRD3C_1119 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nid03032
]
NPIRD3C_1119 (lig)
03400 DNA repair and recombination proteins [BR:
nid03400
]
NPIRD3C_1119 (lig)
Enzymes [BR:
nid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NPIRD3C_1119 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NPIRD3C_1119 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NPIRD3C_1119 (lig)
DNA replication proteins [BR:
nid03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NPIRD3C_1119 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NPIRD3C_1119 (lig)
DNA repair and recombination proteins [BR:
nid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NPIRD3C_1119 (lig)
NER (nucleotide excision repair)
Other NER factors
NPIRD3C_1119 (lig)
MMR (mismatch excision repair)
Other MMR factors
NPIRD3C_1119 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJM92331
UniProt:
A0A0C5BVP5
LinkDB
All DBs
Position
complement(933862..935628)
Genome browser
AA seq
588 aa
AA seq
DB search
MEFSVLADAFNKMESTRKRLELTQYLVELFEKTPQEVISKIVYLLQGKLRPDFEGIELGV
AEKLAIRAISKSSGIPIKKIEEEYRKGGDMGHAATIILEQKTQTTFLVEDITVERVYETL
FKIAKLEGNRSQDMKMKYISSLLNDASPLEASFILKILLGTLRLGIAENTVMDALAIAFS
GNKENRKVLEHAYNVSSDLGKVAEILANDGLEGVEKFKIILFNPIRPMLADRVKSEQEAI
EKMGEEFAAEYKLDGERVQLHIEGDKVVLFSRSLENISSYYPDIIEKIPKAIQAENIILE
AEAVAVNENTGEFLPFQELMHRRRKYKIEKAVTQYPITVNLFDILYCNGKSCLELDYKER
REKMEKVVKEDEFVKHIPMAIVKNENDIEDFFENSINAGSEGLMLKMLDKPYQAGSRGSH
WLKLKREYQNELGDSLDLVVIGGFFGKGRRTGSYGTLLLATYEEDEDTFTSICKVGTGFS
DEDLDQLYQILSPKVTIKKNPRIDSEMEADVWFEPELVIEVVASEITLSPIHKAARDKVR
KGAGLALRFPKFTGKMRVEKMAEDASTNEEIITLYQGQKKVAHDKSLM
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagttttctgttttagctgacgcatttaacaaaatggagtcaactagaaagagatta
gagttaactcaatacttggtagaattatttgaaaagacaccacaagaagtaatctcaaaa
atagtttacctcttacaaggaaaactaagaccagactttgaaggaatagagttaggagta
gcagaaaaacttgcaataagggcaatttcaaagtcttcaggcattccaattaaaaaaatt
gaagaagaatatagaaaaggaggagacatgggacatgctgcaaccataatactagagcag
aaaacacaaacaacgtttcttgtagaagacattacagtagagcgcgtttatgagacacta
ttcaaaattgcaaagctagaaggaaacagatcacaagacatgaagatgaagtacatctca
agtcttctaaacgatgcaagtccactagaagcaagttttattctaaaaattttgttagga
acactaagactaggaattgcagaaaatacagtaatggatgcattagcaatagcattttca
ggaaataaagaaaacagaaaagtgttggagcatgcatacaatgtttctagcgacttggga
aaagtcgcagagattttagcaaatgacggattagaaggagttgaaaaattcaaaataatt
ttatttaatcccatcagaccaatgcttgcagacagagtaaagagtgagcaagaagcaatt
gagaaaatgggagaagagtttgcagcagaatacaagctagatggagaaagagtacagttg
catattgaaggagacaaagttgttttgttttcaagaagtctagaaaacatttcaagctac
tatccagacataatagaaaaaattccaaaagcaattcaagcagaaaacatcatactagaa
gcagaggcagttgcagttaatgaaaacacaggagaatttttaccattccaagaattaatg
cacagaagaagaaaatacaaaatagaaaaagcagttacacagtacccaataacagttaat
ctgtttgatattttgtactgcaatggaaaaagctgtttagagttagactataaagaaaga
agagagaagatggaaaaagttgtaaaagaagatgaatttgtaaaacacattccaatggca
atagtaaaaaacgaaaacgacattgaagacttttttgaaaacagcataaacgcaggaagt
gaaggactgatgctaaagatgcttgataaaccatatcaagcaggttcacgaggaagtcat
tggttaaaactcaaaagagagtatcaaaatgagcttggagatagtttagatctagttgtc
ataggaggattctttggaaaaggaagaagaactgggagttatggaaccttgttactggca
acatatgaggaagatgaagatacatttaccagtatttgtaaagttggtactggattttca
gatgaagatttggaccaattgtatcaaattctaagtcccaaagttacaatcaaaaaaaat
ccgcgcatcgatagtgaaatggaagctgatgtatggtttgaaccagaattagtaatagag
gtagttgcatctgagatcacacttagtccaattcacaaagcagcaagagacaaagttcga
aagggtgcaggacttgcgttaaggtttccaaaatttactggaaaaatgagagttgagaaa
atggcagaggatgcatccacaaatgaagaaataattacactataccaaggtcagaaaaaa
gtagcacatgacaaaagcctcatgtaa
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