Nissabacter sp. SGAir0207: C1N62_10070
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Entry
C1N62_10070 CDS
T09781
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nig
Nissabacter sp. SGAir0207
Pathway
nig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N62_10070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nig03400
]
C1N62_10070
Enzymes [BR:
nig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N62_10070
DNA repair and recombination proteins [BR:
nig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N62_10070
BRITE hierarchy
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
QCR36420
UniProt:
A0A4P8SHI9
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All DBs
Position
2312699..2316142
Genome browser
AA seq
1147 aa
AA seq
DB search
MPHTYRYSLPARRGDVRLLGQLTGSACAVECAEIIERHDGPVMLIAPDMQNALRLRDEIQ
QFTSHLVTALADWETLPYDSFSPHQEIISARLSSLYQLPTLERGVIILPVNTLMQRVCPH
AFLHGHALVMRKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEYATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRVFDVDTQRTLSEVDRINLLPAHEFPTDKAAIELFRSQWREKFDVRRE
PEHVYQQVSKGTFPAGIEYWQPLFFSEPLTTLFSYLPENALLVNTGDLEASAERFWQDVN
QRYENRRVDPMRPLLEPEALWLRVDALFSELKQWPRVQLKGDTLPEKAANTNLGYQPLPL
LAVEPQQRTPLDNLRRFTESFDGSLVFSVESEGRREALQELLARIKLRPTLIDRLEQTEP
AGHYLMIGASERGFLNADRQLALVCESDLLGERVSRRRQDNRRAINTETLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA
PLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKAGYAFRHDREQYQLFCQSFPFE
TTPDQEQAINAVLDDMREPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIELMSRFRSAKEQQGVLEQAAEGKVDIIIGTHKLLMSDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAARRIEELVPEARVAV
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTSVGFTLYMELLESAVNALKEGREPSLEDLTSSQTEVELRMPSLLPEDFVPDV
NTRLSFYKRIASAKHEGELEEIKVELIDRFGLLPDAARNLLSIAALRLAAQALGIKRIEG
NDRGGFIEFGEKNRVDPGYLIGLLQKEPQVYRLDGPTKLKFTRDLSERNLRLSFIGDHLK
AFAAHTL
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacacataccgctattccctgcccgcccgccgtggtgatgtccgcctgttgggc
caactgaccggttcggcctgcgccgttgagtgcgccgagatcattgagcgccatgatggc
ccggtgatgctgattgcgcccgacatgcagaacgccctgcgcctgcgtgacgagattcag
caatttacctcgcatttggtgaccgcgctggcggattgggagacactgccctacgacagc
ttctcgccgcatcaggagatcatctccgcccgcctctccagcctctaccagttgccgacc
ctggagcgcggcgtgatcatcctgccggtcaacaccctgatgcagcgtgtctgcccgcac
gccttcctgcacggccacgcgctggtgatgcgcaaggggcagcggctgtcacgcgacaag
ctgcgcgcccagctggagcaggcgggctaccgcagcgtggatcaggtgatggagcatggc
gagtatgccacgcgcggcgcgctgctcgacctctatccgatgggcagtgaggagccgtac
cgcatcgacttcttcgatgacgagatcgacagcctgcgggtgtttgacgtggatacccag
cgcactctgagcgaggtggatcgcatcaacttgctgccagcgcatgagttccccaccgac
aaggcggcgattgagctgttccgcagccagtggcgcgagaagttcgacgtccggcgcgag
ccggagcatgtctaccagcaggtgagcaagggcaccttcccggccgggattgagtactgg
cagccgctgttcttcagcgagccgctcaccaccctgttcagctacctgccggagaatgcc
ctgctggtgaacaccggcgaccttgaggcctccgccgaacgtttctggcaggatgtgaac
cagcgctatgagaaccgccgcgttgacccaatgcgcccgctgctggagccggaggcgctc
tggctgcgggtcgatgccctgttcagtgaactgaagcagtggccgcgcgtgcagcttaag
ggtgacaccctgccggagaaggcagccaacaccaacctcggttaccagccgctgccgctg
ctggcggtagagccgcaacagcgcacgccgctggacaacctgcgccgctttaccgaatcc
ttcgacggcagtctggtcttctccgtggagagcgaggggcggcgcgaggcgttgcaggag
ctgctggcgcgcatcaagctgcgtccgacgctgattgatcgtctggagcagactgaaccg
gctggccactacctgatgattggcgccagcgagcgcggcttccttaacgcggatcgccag
ttggcgctggtgtgcgaaagcgatctgctgggcgagcgcgttagccgccgtcggcaggac
aaccgccgcgccatcaataccgagaccctgatccgcaacctggcggagctacaccccggc
cagccggtggtgcaccttgagcacggcgtcgggcgctacgcgggcatgaccacgctggag
gctggcggcatcaaggcggagtatttaatcctgacctatgccggcgaggacaaactctat
gtgccggtctcctcgctgcacctgatcagccgctacgctggcggggccgacgagaacgcg
ccgctgcacaaactgggcggcgacgcctggagccgggcgcggcagaaggccgccgagcgg
gtgcgtgacgtggcggcggagctgctggacatctacgcccagcgcgccgccaaggccggt
tacgccttccgccacgaccgcgagcagtaccagctcttctgccaatccttcccgtttgag
accacgccggatcaggagcaggcaatcaatgccgtgctggatgacatgcgcgagccgctg
gcgatggatcggctggtgtgtggcgacgtcggcttcggcaagaccgaggtggcgatgcgc
gccgccttcctggcggtggagaacaacaaacaggtggcggtgctggtgccgaccaccctg
ctcgcccagcagcactttgacaacttccgcgatcgcttcgccaactggccggtgcgcatt
gagctgatgtcacgcttccgcagcgccaaggagcagcagggcgtgctggaacaggcggcc
gagggcaaggtggacatcatcatcggcacccacaagctgctgatgagcgacctgcgctgg
aaagatctcggcctgctgattgtcgatgaggagcaccgcttcggcgtgcgccacaaggag
cgcatcaaggcgatgcgcgctgacgtcgacatcctgaccctgaccgccacgccgatcccg
cgcacgctcaacatggcgatgagcgggatgcgcgatctctcaatcattgccaccccaccg
gcgcgccggctggcggtgaagaccttcgtgcgcgagtatgacagtctggtggtgcgcgag
gcgatcctgcgtgaggtgctgcgcggcggccaggtctactacctctataacgacgtcgag
aacatcgagaaggcggcgcggcggattgaggagctggtgccggaggcgcgggtggcggtc
ggccacggccagatgcgcgagcgcgatctggagcgggtgatgaatgacttccaccaccag
cgcttcaacgtgctggtctgcaccaccattattgagaccggcatcgacatcccgagcgcc
aacaccatcatcattgagcgcgccgatcaccttggtctggcgcagttgcaccagctgcgc
ggccgcgtgggccgttcgcaccatcaggcctacgcctacctgctgacgccgccgccgaag
gcgatgagcactgacgcgcagaagcggctggaggcgatcgcctcgctggaggatctgggt
gccgggtttgcgctggcgacccacgatctggagatccgcggtgcgggcgagctgctgggc
gaagaccagagcggccagatgaccagcgtcggctttaccctctacatggagttgctggag
agcgcggtcaatgccctgaaagaggggcgtgagccgtcgctggaggatctcaccagcagc
cagaccgaggtggagctgcggatgccgtcgttgctgccggaggactttgtgccggacgtc
aacacccgcctctccttctataagcgcattgccagcgccaagcacgagggtgagctggag
gagatcaaggtggagctgattgaccgcttcggcctgctgccggatgcggcgcgcaacctg
ttgagcatcgccgcgctacggctggcggcgcaggcgctgggcatcaagcggattgagggc
aacgaccgtggcggctttattgagtttggcgagaagaaccgtgtcgatccgggctacctg
attgggctgttgcagaaggagccgcaggtctaccggctggatgggccaaccaagctgaag
ttcacccgcgatctcagcgagcgcaacctgcgcctctcctttatcggcgaccatttgaag
gccttcgccgcccacaccctgtaa
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