Nitrincola iocasae: F5I99_13445
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Entry
F5I99_13445 CDS
T06212
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
nik
Nitrincola iocasae
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_13445
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
F5I99_13445
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
AAA_22
zf-ribbon_3
zinc_ribbon_2
SLFN-g3_helicase
AAA_16
zf-tcix
ERCC3_RAD25_C
SNF2-rel_dom
DZR
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEW07414
UniProt:
A0A5J6LFS3
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All DBs
Position
2928319..2930055
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AA seq
578 aa
AA seq
DB search
MQPIILRNYQRQAVEATLSHFRHSSESAVIVLPTGAGKSLIIAELARLARQRILVLTHVR
ELVEQNHAKYAALGLQAGIFSAGLKRRDHQHQVTFASIQSLAGHTQSFSGAFSLVIIDEC
HRVSNDEDSQYQQVLTHLRQHNPALKLLGLTATPYRLGEGWIYRRDYRGFVRDTLSATFE
HCIYELPLSQLIREGYLTPPVCIDAATRHYDFSQLSNECAGDYDTEEVNRLLHKYPRVTR
AICEEIVEQAVRRKGVMIFAASIEHAEEILSYLPRAQACLITGNTDTVDRDQMLQAFKQQ
QIKYLVNVSVLTTGFDAPHVDLIAILRPTRSVSLYQQIAGRGLRLFPGKSDCLIIDYAAN
GFNLFSPEVGSPKPAANTEPVQVFCPECGFANTFWGRTDDQGQVVEHFGRRCQGLVGESL
DNQCHFRFRFRECPQCNAENDITARRCEQCKSILIDHDDLLKRALSLKNARILRCAGMTF
TLQDERLRVTYHDEEGETLSEYFDLSQPAQQKVFNHIFRRRHDDKPRSKINSAQQALAFA
TQLKHPDFVIARQHKHYWSVSERVFDYVGKYRKAYELY
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgattatactacgtaattaccagcggcaggcagtcgaagcaacgctgagtcac
tttagacacagctcagaatcggctgtaattgtattaccgaccggtgctggcaagagtttg
atcattgccgaactggcgcgtcttgctcgccaacgcatattggtgctgacccatgtcagg
gagttggtcgagcaaaaccatgctaaatatgccgcactaggactacaagccggtattttt
tcggctggattgaagcgtcgggaccatcagcaccaggttacttttgccagcattcaatcc
ttagccggacacacccagtcatttagtggagccttctcactggtaattattgatgaatgt
catcgtgtcagtaacgatgaagacagtcagtatcagcaagtgctgacgcatctgcgccag
cataaccccgctttaaaattactcggtctcaccgctaccccctatcggctgggtgaaggc
tggatctaccgccgggattatcgtggctttgtcagagacacactcagcgccacctttgag
cattgtatttatgagctgcccctcagccagcttattcgcgaaggttatttgaccccaccg
gtttgtattgatgcagccactcgccattatgatttttcccagctcagtaacgagtgtgca
ggtgattatgacaccgaagaggttaatcggctgctacacaaatatcctcgggtcacccgg
gctatctgcgaagagatcgtagaacaggccgtccgacgcaagggagtaatgatttttgct
gccagcattgagcatgctgaagaaattctgagctacctgccgcgggcacaggcttgtctg
atcaccggcaatacagacacagtcgaccgggatcagatgctgcaagccttcaaacaacag
cagatcaagtatctggttaacgtttcagttctgacgaccgggtttgatgcgcctcatgtg
gatttaattgccattttgcgcccgacccgctcggtcagcctgtatcagcaaattgccgga
cgagggctgcgactctttcccggtaaatccgactgcttaatcatagactatgccgctaat
ggttttaatctgtttagccccgaggtcggttctcccaaaccagcagccaataccgagccg
gtgcaggtattttgcccggaatgtggttttgccaataccttctggggacgcaccgatgac
caaggccaggttgtggaacactttggtcgccgttgccaaggcctggtgggtgaatccctg
gataatcagtgccattttcggttccgttttcgcgaatgcccgcaatgcaacgcagaaaac
gatatcactgcaagacgctgtgagcagtgcaagagtatactcattgatcatgacgacctg
ttgaaacgggcattatcgttgaagaatgcccgaattctccgctgtgccggtatgacattc
accctacaggatgaacgtttgcgagtgacctaccatgatgaagagggtgaaacactcagt
gaatattttgacttgagccaaccggctcagcagaaggtttttaatcatatattcaggcgt
agacatgacgacaaaccgcgcagcaaaatcaactcagcacaacaggcactggcctttgca
actcagttaaaacaccctgactttgtcatcgccagacaacacaagcactactggtctgtg
agtgaaagagtgtttgattatgtcggcaaataccgcaaggcttatgagttatactaa
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