KEGG   Nitrosopumilus sp. K4: NsoK4_02655
Entry
NsoK4_02655       CDS       T07707                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nip  Nitrosopumilus sp. K4
Pathway
nip03030  DNA replication
nip03410  Base excision repair
nip03420  Nucleotide excision repair
nip03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NsoK4_02655
   03410 Base excision repair
    NsoK4_02655
   03420 Nucleotide excision repair
    NsoK4_02655
   03430 Mismatch repair
    NsoK4_02655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nip03032]
    NsoK4_02655
   03400 DNA repair and recombination proteins [BR:nip03400]
    NsoK4_02655
Enzymes [BR:nip01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NsoK4_02655
    6.5.1.6  DNA ligase (ATP or NAD+)
     NsoK4_02655
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NsoK4_02655
DNA replication proteins [BR:nip03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NsoK4_02655
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NsoK4_02655
DNA repair and recombination proteins [BR:nip03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NsoK4_02655
   NER (nucleotide excision repair)
    Other NER factors
     NsoK4_02655
   MMR (mismatch excision repair)
    Other MMR factors
     NsoK4_02655
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QUC65176
UniProt: A0A8B2HSG1
LinkDB
Position
complement(455791..457557)
AA seq 588 aa
MEFAILADAFRKMESTRKRLELTQYLVELFEKTPQEVISKIVYLLQGKLRPDFEGIELGV
AEKLAIRAISKSSGIPIKKIETEYRKSGDLGSASTVILEQKTQTTFLMEDITVERVYETL
FKIAKLEGSRSQDMKMKYISSLLNDATPIEASFILKILLGTLRLGVAENTMMDALAIAFT
SNKENRKQLEHSYNVSSDLGKVAEVVASKGLEGIEKFEINLFNPIRPMLADRVKSEDEAI
EKMGNKFAAEYKLDGERVQLHIEGERVILFSRSLENITSYYPDIVEKIPKSIQAEKVILE
AEAVAINENSGEFLPFQELMHRRRKYKIEKAVLQYPISVNFFDILYHNGKSCLELEYQER
RKLLEKIVKEDEFAKNIPMTIVTNENEIEEFLENSINAGCEGLMLKMLDKPYQAGSRGSH
WLKLKREYRNELGDSLDLVVIGAFFGKGRRTGRYGTLLLASYDDDQDMFTSICKVGTGFT
DEDLDQLYQILSDKVTIKKNPRIDSEMEADVWFEPELVVEVVASEITLSPIHKAARDQIR
KNTGLALRFPKFTGKIRVEKAAEDASTNEEVMTLYKGQKKVAHDKNLM
NT seq 1767 nt   +upstreamnt  +downstreamnt
gtggaatttgccatactagctgatgcatttcgtaagatggaatcaactagaaaaagactt
gaactaacacaatacctagtagaattatttgaaaagacacctcaagaagtaatttcaaaa
atcgtatatttgcttcaaggaaaacttagaccagattttgaaggaatagaactcggagta
gcagaaaagcttgccattagagcaatttcaaaatcatcaggcatacccataaaaaaaatt
gaaacagaatatagaaagagtggagatttgggaagtgcatctaccgtaattttagaacaa
aaaacacagacaacttttctcatggaagacatcacagtagaaagagtttatgaaacatta
ttcaaaattgcaaagttagaaggatctcgttcacaagacatgaaaatgaaatatatttca
agtcttctaaatgatgcaacaccaattgaggcaagttttattctaaaaattttactcggt
acattaagacttggcgtagcagaaaatacaatgatggatgcacttgcaattgcatttaca
agcaataaagaaaatagaaaacagttagagcactcttacaatgtatcaagcgatctaggt
aaggttgcagaagtagtagcaagtaaaggattagaagggattgaaaaatttgagattaat
ttattcaatccaattcgccctatgctggcagatagagtgaagagtgaagatgaagcaata
gaaaaaatgggtaacaagtttgcagcagaatacaaactagatggagaaagagtacaatta
catattgaaggagaaagagtaattttattttcaagaagtttagaaaacattacaagttat
tacccagacattgtagaaaaaataccaaaatcaattcaagcagaaaaggtcattttagaa
gcagaggcagttgcaattaatgaaaattctggagaatttttaccatttcaagaattgatg
catagacgaagaaagtacaaaatagaaaaagcagtattacaatatccaataagcgtaaac
ttttttgatatactataccacaatggcaaaagttgcctagaattagaatatcaagaaaga
agaaaattgctagaaaaaattgtcaaagaagatgaatttgctaaaaatatacccatgaca
attgttacaaatgaaaacgaaattgaagaatttttagaaaacagcatcaacgcaggatgt
gaaggactaatgctaaagatgctagataagccatatcaagcagggtcaaggggcagtcat
tggttaaagctcaaaagagaatacagaaatgaattaggagatagtttagatctcgttgta
attggtgcattttttggaaaaggtagaagaactggaagatatggtacattattgttagca
agttatgatgacgaccaagacatgtttacaagcatatgtaaagttggtacaggttttact
gatgaagatttagatcaactttatcaaattttatcagacaaagtaacgataaagaaaaat
ccaagaatagatagcgaaatggaagctgatgtttggtttgaaccagaattagttgtagag
gttgtagcttcagaaattacactcagtccaattcacaaagcagcaagagatcaaattagg
aaaaatacagggcttgcattaagattcccaaagtttacgggtaagatcagagtagagaaa
gcagcagaagatgcatcaacaaatgaagaagtcatgacattatacaaagggcaaaaaaaa
gttgcacatgacaaaaatttgatgtaa

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