Nitrosopumilus sp. K4: NsoK4_05245
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Entry
NsoK4_05245 CDS
T07707
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nip
Nitrosopumilus sp. K4
Pathway
nip03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NsoK4_05245 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nip03021
]
NsoK4_05245 (tfb)
Transcription machinery [BR:
nip03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NsoK4_05245 (tfb)
Prokaryotic type
Archaeal type
TFB
NsoK4_05245 (tfb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Sigma70_r4
Ribosomal_S27
HTH_AsnC-type
Cyclin_N
HEF_HK
RPW8
zf-CCHC_5
HTH_3
RB_B
TPR_5
zinc_ribbon_2
Motif
Other DBs
NCBI-ProteinID:
QUC63874
UniProt:
A0A8B2HRS1
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Position
871049..871957
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AA seq
302 aa
AA seq
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MVKSVNPKDRCPRCGQGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKSR
AGVPTSLAMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQ
AFSELDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRT
LKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRKATKIL
QTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVAL
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagtgtaaatccaaaagacagatgtccaagatgtggacaaggcaccctagtt
acagatgcaaatactggggaaaatttttgtggaaagtgtggatttgtaattactgacaaa
gtagaagaatcaggaccagagtggagatcattttcgaatgaaggagaaaacaaaagcaga
gcaggagttccaacatcacttgcaatgcacgacatgggattagcaactgtaatcaatcct
caaaatcgtgatgctactggaaaaccacttacagcatcaatgaaaagtacaattgaaaga
ctaagaacgtgggacagcagaagtcaagttcatgaaccagttgacagaaacttcagacaa
gcgtttagtgaacttgatagattaaaagacaaacttgcagtaggtgatgcagtaattgaa
aaagcagcttatatttacagaaaggcattagaaaaaggattggttagaggaagatcaata
tctgcactcattgcatcagcattgtatgctgcatgtagagacactgaaacaccaagaaca
ctaaaagatatcgggcaggcaagtaacataaaaagaaaagacattgcaagatgttatcgc
ctattactacgagagttaaatttgaaaatgccagtagttgatcctgtcaaatgtatttcc
aggattgcaagcaaagcagggctatctgaaaaaactaaaagaaaagcaacaaagattttg
caaacagcagaagagaataaaatttcagctggaaaagatcccatgggattggcagcagca
gctctttacgtagcatgtgtgacaaatggcgaaaacaaaacacaaagagatgtagcagaa
gctgcaggagttacagaggtcaccatcagaaatagatacaaaggacttaaagttgcatta
aatctctaa
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