Candidatus Nitrosopumilus sediminis: NSED_06350
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Entry
NSED_06350 CDS
T02303
Name
(GenBank) transcriptional regulator TrmB
KO
K23356
HTH-type transcriptional regulator, sugar sensing transcriptional regulator
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nir03000
]
NSED_06350
Transcription factors [BR:
nir03000
]
Prokaryotic type
Helix-turn-helix
Other families
NSED_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrmB
Regulator_TrmB
DUF2250
Motif
Other DBs
NCBI-ProteinID:
AFS83070
UniProt:
K0BDE9
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All DBs
Position
1053130..1054290
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AA seq
386 aa
AA seq
DB search
MVNEHVLTVSLEEFGLSKYEAQAYVALIARGTISASELAYYSEIPRTKIYPTLLKLENKK
LVIISKSKPIMCTAIAPEDAFDGIIHEQINKVNAMNSLISNLKKASEESRKSRGSEERRY
FHLSANNVLSQLQTMIEGSKSSIKIMTDQWGFGLLAECKEQLLSVLRRNLDVKVLASPAQ
ICSESYRSIPDGVEIRASEITQNCFIFDETELLMINNDNGKGAVFSSTEILGINQEKVFS
NIWKNATKTKALADMTKTEAQEIYKIIKTVNDAGLMYILNSTMISKKTDADMLKLLEKNG
ISLKSKTLDDIIEIMDAVMQITCSGHVNFEANTKNITVESKLNSGHSLPWVSILDGCLQK
QGYKTRTIYQNNSNKGEKVLIKISKN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgagcacgttttaacagttagcctagaagaatttggattaagtaaatatgaa
gcacaggcatatgtggccctgatagcaagaggaacaatttctgctagtgagttggcatat
tattcagaaattccaagaacaaaaatttacccgactttactaaaattagaaaataagaaa
ctagtcattatttcaaaaagcaaacccattatgtgtacagcgattgctccagaagacgct
tttgatggaataattcatgagcagatcaacaaagttaatgcaatgaattcattgatttca
aatttgaaaaaggcaagcgaagagagcagaaaatcaagagggtcagaggaaagaagatat
tttcatttgagcgcaaacaatgttttgtctcaactccaaacaatgattgaaggttcaaaa
tcatcaattaaaataatgacagatcagtggggttttggattattagctgaatgtaaagaa
caactattatcagttttgagaagaaatttggatgtcaaagttctggcatcaccagcacaa
atttgttcagaatcatatagatccattccagatggagttgaaatcagagcatcagagatt
acacaaaattgtttcattttcgatgaaacagaattactaatgataaacaatgataatgga
aaaggagctgttttctcatctacagaaattttagggattaatcaagagaaagtattttca
aacatttggaaaaatgcaactaaaaccaaagctcttgcagacatgacaaaaacagaagca
caggagatttacaaaataattaaaacagtaaatgatgcaggtttgatgtatatcctaaac
tctacaatgatatctaaaaaaacagatgcagatatgctcaaactattagagaagaacgga
atttctctcaaatctaaaacacttgatgacataattgagataatggatgcagtaatgcaa
atcacgtgttcaggccatgttaattttgaagcaaacaccaaaaacattactgtagaatca
aaattgaatagtgggcattcattaccatgggtatcaattttggatggatgtcttcaaaaa
caagggtacaagacaagaacaatatatcaaaacaattcaaacaagggtgaaaaagtactc
ataaaaataagcaaaaattaa
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integrated database retrieval system
