KEGG   Candidatus Nitrosopumilus sp. SW: Nisw_08310
Entry
Nisw_08310        CDS       T06175                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
niw  Candidatus Nitrosopumilus sp. SW
Pathway
niw03030  DNA replication
niw03410  Base excision repair
niw03420  Nucleotide excision repair
niw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:niw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Nisw_08310
   03410 Base excision repair
    Nisw_08310
   03420 Nucleotide excision repair
    Nisw_08310
   03430 Mismatch repair
    Nisw_08310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:niw03032]
    Nisw_08310
   03400 DNA repair and recombination proteins [BR:niw03400]
    Nisw_08310
Enzymes [BR:niw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Nisw_08310
    6.5.1.6  DNA ligase (ATP or NAD+)
     Nisw_08310
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Nisw_08310
DNA replication proteins [BR:niw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Nisw_08310
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Nisw_08310
DNA repair and recombination proteins [BR:niw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Nisw_08310
   NER (nucleotide excision repair)
    Other NER factors
     Nisw_08310
   MMR (mismatch excision repair)
    Other MMR factors
     Nisw_08310
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QDI89523
UniProt: A0A514LCD6
LinkDB
Position
complement(1388811..1390577)
AA seq 588 aa
MEFSILADSFNKMESTRKRLELTQYLVELFENTPQEVISKIVYLLQGKLRPDFEGVELGV
AEKLAIRAISKSSGIPIKKIEEEYRKGGDLGHAATVILEQKTQTTFLVEDITVERVYETL
FKIAKLEGNRSQDMKMKYISSLLNDASPLEASFILKILLGTLRLGIAENTVMDALAIAFS
GNKENRKILEHAYNVSSDLGKVAEVLATEGLEGVEKFKIILFNPIRPMLADRVKSEQEAI
EKMGNEFAAEYKLDGERVQLHIEGEKVVLFSRSLENISSYYPDIIEKIPKSIQAENIVLE
AEAVAINENTGEFLPFQELMHRRRKYKIEKAVTQYPITVNLFDVLYCNGKSCLELDYKER
REKMEKVVKEDDFVKYIPMTIVKNENDIEDFFENSINAGSEGLMLKMLDKPYQAGSRGSH
WLKLKREYQNELGDSLDLVVIGGFFGKGRRTGNYGTLLLATYEEDEDMFTSICKVGTGFS
DEALDQLYQILNPKVTIKKNPRIDSEMEADVWFEPELVIEVVASEITLSPIHRAARDKVR
KGAGLALRFPKFTGKIRVEKMAEDASTNEEVITLYQGQKKVAHDKSLM
NT seq 1767 nt   +upstreamnt  +downstreamnt
atggagttttccatcttagctgattcatttaacaaaatggaatcaacaagaaaaagacta
gaattaacacaatacttggtagaattatttgaaaataccccacaagaagtaatttcaaag
atagtatatctattgcaaggtaaacttaggccagattttgaaggagttgaattaggagtt
gcagaaaaactcgcaataagagcaatttcaaaatcttcgggaattccaattaaaaaaatt
gaggaagagtatagaaaaggaggagatctaggacatgctgctactgtaatactggaacaa
aaaactcagacaacatttcttgtagaagacattacagttgaaagagtctatgaaacactc
ttcaaaattgcaaaattagaaggaaacagatcacaagacatgaaaatgaaatacatttcc
agtctacttaatgatgcaagcccattggaggcaagtttcattctaaaaatattgctagga
acactaagactaggaattgcagaaaatacagttatggatgcattagcaatagcattttca
ggtaacaaagaaaacagaaaaattttggagcatgcatacaatgtttctagtgatttagga
aaggttgcagaagttttggcaactgaaggattagaaggagtcgaaaagttcaaaataatt
ttgtttaatccaatcagaccaatgcttgcagacagagtaaagagtgaacaagaagcaatt
gaaaaaatgggaaatgaatttgcagctgaatacaaactagatggggaaagagtacaatta
cacatcgaaggagaaaaagtagttttgttttcaagaagtttagaaaatatttcaagttat
tatccagacattatagaaaaaattccaaaatcaattcaagctgaaaacatagtattagag
gctgaagcagttgcaatcaatgaaaacactggagagtttttgccgtttcaagaattaatg
catagaagaagaaaatacaagattgaaaaagcagttacgcaatatccaattacagttaat
ctgtttgatgttttgtattgtaatggaaaaagttgtttggaattagactataaagaaaga
agagagaagatggaaaaagtggtaaaagaagatgattttgtaaaatacataccaatgact
attgtaaaaaatgaaaacgacattgaagacttttttgaaaacagtatcaatgcaggaagt
gaaggattaatgttaaagatgttagacaaaccatatcaagcaggatcaagaggaagtcat
tggcttaaactcaaaagagaatatcaaaatgaattaggagatagtttagatcttgttgtg
attggaggattttttggaaagggacgaaggacaggaaattacggaactttacttttagca
acatatgaagaagatgaagatatgttcaccagcatttgtaaagtaggtacaggtttttca
gatgaggcattagatcaattgtatcaaattctaaaccccaaagtaacaattaagaaaaat
ccacgaattgatagtgagatggaagcagatgtgtggtttgaaccagagttagtaattgaa
gtggtcgcatctgaaattacacttagtccaattcacagagcagctagagacaaagtaaga
aaaggtgcaggacttgcattaagatttccaaagtttacaggaaagataagagttgagaaa
atggccgaggacgcatctacaaacgaagaagtgatcacattgtatcagggtcagaaaaaa
gtagcacatgacaaaagcctcatgtaa

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