Nitrospira japonica: NSJP_0065
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Entry
NSJP_0065 CDS
T05001
Symbol
uvrB
Name
(GenBank) excinulease of nucleotide excision repair, DNA damage recognition component
KO
K03702
excinuclease ABC subunit B
Organism
nja
Nitrospira japonica
Pathway
nja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NSJP_0065 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_0065 (uvrB)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NSJP_0065 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NSJP_0065 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
DUF87
AAA_30
AAA_22
SWI2_SNF2
Kinesin
AAA_16
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
SLM46237
UniProt:
A0A1W1HZU6
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Position
I:complement(58563..60566)
Genome browser
AA seq
667 aa
AA seq
DB search
MPQFQLEASFKPCGDQGQAIDKLASGVLAGRRHQALLGVTGSGKTFTMANVVERVQKPTL
VLVHNKTLAGQLYQEFKQFFPHNAVEYFISYYDYYQPEAYIPQTDTYIAKDSSINDAIDQ
MRHAATTSLLQRNDVLIVSSVSCIYGLGSPEVYHDMLLYLEEGMEIRREKILAKLVEIQY
ARNDVDFHRGTFRARGDVIEIFPASQEARSVRVELFGDVVDALHQIDPLTGKSLGKLPKI
AVYPNTHYLIAPDRYERAITGIEEELDERVALFKRQNQLVEAQRIAQRTKFDLEMIRAMG
YCHGIENYSRHLSGRAAGEPPPTLIDYFPKDFLLIIDESHATVPQVGGMYEGDYSRKRTL
VDYGFRLPSAVDNRPLKFHEFEQILSQVIYVSATPGPYELEHVKGDVVEQIIRPTGLLDP
NIELHPAKGQVDHLLEEVRKETAREGRVLVTTLTKRMAEDLTEYYHELGVKVRYLHSDIK
TLERAEIVRDLRRGQFDVLVGINLLREGLDLPEVTLVAILDADKEGYLRSYRSLVQTAGR
AARNVHGRVIFYGDSVTDSMKAAMDETARRRMIQREYNERHGIEPTSIRKSIPALDYPGV
EPDPVQLELAADAESSYGAEPSDSGLIQRLEQEMKEAAKLLEFERAAVLRNRIRALKLRD
LELKSGS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagttccaactcgaagcgtcgttcaagccgtgcggagatcaggggcaggctatc
gacaaactggcgtccggcgtcctcgccggacgccggcatcaggccctgctcggggtcacc
gggtcgggcaagaccttcacgatggccaacgtggtcgagcgggttcagaagcccacgctc
gtgctggtccacaacaagaccctggcgggtcagctgtatcaggaattcaagcagttcttc
ccgcacaacgccgtcgaatacttcatcagttattacgactactaccagccggaagcgtac
attccgcagaccgatacgtacatcgccaaggattcctcgatcaacgacgccatcgatcaa
atgcggcatgcggccacgacgtcgctgttgcaacgcaacgacgtgctgatcgtgtcgtcg
gtctcctgcatctacggactgggttcgcccgaggtctatcacgacatgctcctgtacctc
gaagaaggaatggagatccgccgtgaaaagatcctcgcgaagctcgtggagattcagtac
gcccggaacgacgtcgatttccaccgtggaacgttccgcgcccgcggggacgtgatcgag
atttttcctgcgtcgcaggaggcccgctccgtccgggtcgaactgttcggcgacgtcgtg
gatgccctccatcagatcgatccgctgaccggcaagtcgctcggcaagctgcccaagatc
gccgtctatccgaacacccactatttgatcgcacccgaccgctatgagcgggcgatcacg
ggcatcgaagaagaactcgacgagcgggtggccctgttcaagcggcagaaccagctggtc
gaagcgcagcgcatcgcgcagcgcaccaaattcgatctcgaaatgattcgcgcgatgggc
tactgccacgggatcgaaaactactcccgccatctgagcggccgggccgccggcgaaccg
cctccgacgttgatcgactattttccgaaggactttctgctcatcatcgacgagtcccac
gcgacggtgcctcaggtcggcgggatgtacgagggggactattcgcgaaagcggacgttg
gtggactacgggttccggctgccgtcggcggtggacaaccggccgctgaagtttcacgaa
ttcgagcaaatcctcagtcaggtgatctatgtgtcggcgacgcccggaccctacgaactc
gaacacgtgaagggagatgtcgtcgaacagatcatcaggcccaccggtctgctcgatccg
aacatcgaactccatccggccaaggggcaggtggatcatctgctggaagaggtccggaag
gagacggcccgggaggggcgcgttttggtcacgacccttacgaagcgcatggccgaggat
ctgaccgagtactatcacgaattaggggtcaaagttcgctatctgcattcggacatcaag
accctcgaacgggccgaaatcgtccgggatctccgccgcgggcagttcgacgtactggtg
gggatcaatctcctgcgagaagggctcgatctccccgaggtcactttggtggccattctg
gatgccgacaaggaagggtatctccggtcgtatcgatccctcgtgcagaccgccggccgg
gccgcgagaaacgtccacgggcgggtgattttctacggtgattcagtcactgactccatg
aaggccgcgatggatgagaccgcgcgccggcgtatgattcaacgcgaatataacgaacgg
cacgggatcgagccgacctcgatcagaaagagcatcccggcgctcgattatcccggcgtc
gagccggatccggtgcaactggagcttgccgctgatgcggagtcgtcctacggcgcggag
ccgtcggattccggattgattcaacggttggagcaagaaatgaaagaggcggccaagctg
ctggagtttgagcgggccgccgtcctgagaaatcgaatccgggcgctgaagctgagagat
ctggagctgaagtccgggagctag
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