Nitrospira japonica: NSJP_1173
Help
Entry
NSJP_1173 CDS
T05001
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD [Includes: 3'-phosphoesterase; DNA ligase D; DNA repair polymerase]
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nja
Nitrospira japonica
Pathway
nja03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NSJP_1173 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_1173 (ligD)
Enzymes [BR:
nja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NSJP_1173 (ligD)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NSJP_1173 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
SLM47345
UniProt:
A0A1W1I2Z9
LinkDB
All DBs
Position
I:complement(1101511..1104105)
Genome browser
AA seq
864 aa
AA seq
DB search
MKRGNVARQLQRYRLKRDFVRTPEPSGRRAQERSVEDRLFVIQKHAATRLHYDFRLELDG
TLKSWAVPKGPSLDPSQKRLAVHVEDHPLDYAEFEGTIPSKQYGAGTVLIWDRGTWQPIG
DPHDGYRRGVLKFRLDGRKLHGAWALVRMHPRGKSDRKGDENDNWLLIKEKDESAERGSR
AEIVERSTESVKSGRQLEEVAESHVPSLKAGDLTGARQAPLPERLSPQLATLVDAMPSGE
GWIHEIKYDGYRILCRIRRGKAQLFTRNGNDWTEKLSVQVQAVESLGLTDAWLDGEVVVF
TEEGKTDFQALQNAFDANFTGRIAYCLFDIPYVDGYDLRAAPLIERKRLLAALLDPLRPG
RGRGSRSRQRHAGQTVLRYSDHITGQGETSFEEACRRGLEGLIAKRADSVYRSGRGRSWL
KVKCERRQEFVIGGFTEPAGSRSGFGALLVGYYEQGRLRYAGRVGTGFSMTSLRTLRRRL
TSLEQSRPPFADPPTGREAHGIRWVSPELVAEVRFSEWTKDGLLRQPSFQGLRTDKAPRS
IGRERSASEDTATSPASPEPNAARAAVRGTTETIRLTHPDRVLYPDVGLTKKDLARYYEL
VADRILPHLRGRPLTLVRCPRDYQDCFYQKHVNERMPPGIGRVPIEEDGGRAMYMTADSL
EALQGLVQMNALELHTWGATRDRLDRPDRLTFDLDPDPSLPWPRVVEAAQLMRELLTELG
LACFLKTTGGHGLHVVTPIQRNMDWEDAKGFAKSVADHMAATIPQRFISVMAKRARKGKI
FIDYLRNGRGATAIAAYSPRARSGAPVSMPIAWEELHSARLKSDHFTVLNIEERLKDRTR
DPWEDYAQSARTVTNAMKARLSRR
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcggcaatgtcgcccggcagcttcaacgctaccgcctcaagcgcgacttcgta
cggactccggagccgagcggacgacgggctcaggaacgctccgttgaagaccgcctcttc
gtcattcaaaaacacgcggcgacacgtttgcactatgactttcgcctggaactcgacgga
acgctcaaaagctgggcggtccccaaagggccgagtctcgatccctcgcagaagcgattg
gccgtccatgtcgaggaccatccgctcgactatgccgagttcgaagggaccattccgtcg
aaacagtacggagccggcacggtcctcatctgggatcgtgggacctggcaacccatcgga
gacccacacgacgggtaccgccgaggagttctgaagtttcggctggacgggaggaaattg
catggcgcatgggcgttggtgcgcatgcatcctcgagggaaatccgatcggaaaggggat
gagaatgataactggctgctcatcaaggaaaaagacgagagtgccgaacggggcagccgg
gcggagatcgtcgaacgatcgaccgaaagcgtcaagagcggccggcaactggaggaagtc
gccgaatctcacgtcccatctttgaaagcaggcgaccttaccggcgctcgacaggcgcct
ctaccggaacgactgtcgccccagttggccacactcgtcgacgcgatgccgtccggcgaa
ggttggattcatgaaatcaagtacgacggctatcgcatcctctgccggatccggcgcgga
aaggcgcagctgttcacgcgcaacggcaacgactggaccgagaagctttcagttcaggta
caggctgtcgaatcgctggggttgaccgatgcctggctcgacggagaggtggtcgtcttt
accgaagagggcaagacagatttccaggccctgcaaaatgccttcgacgccaatttcacc
ggccggatcgcatactgcttgttcgatatcccgtacgtggacggctatgacttgcgggcg
gcgccgctcatcgagcgcaaacgcctgctggcggcgctcctcgatccattgcggccggga
cggggacgcggctcccgctcacgccagcggcacgccggccagacagtcttgcgctacagc
gatcacattaccggacagggcgaaacctctttcgaagaggcttgccgccgcggcctcgaa
gggctgatcgccaagcgagcggattccgtctaccggtccggacgaggccggtcctggctc
aaggtcaaatgcgaacgacgccaggaattcgtcatcggcggatttacggagccggccggg
tcccggtccgggttcggcgcattgctggtcggctactacgagcagggacggctccgctat
gcgggaagggtcggaaccggattctccatgacgtccctgcgtacgctgcgacgcagattg
acatctctcgaacagtcgcggccgcctttcgccgatccgccgaccggtcgcgaggcgcac
gggatccgctgggtaagcccggaactggtcgcggaagtccgcttctcggaatggaccaag
gacggcctgctccggcaacccagttttcaagggcttcgaacggacaaggcgcctcgttca
atcgggcgggaacgttccgcttcggaagacacggcgacgtcaccagcctcacccgagccg
aacgccgcgcgagcagcagtccgcggcacgaccgaaaccatccggctgacccatcccgat
cgcgtgttgtatcccgacgtcggcctgaccaagaaggacctggctcgctattacgagttg
gtagcggatcggatccttccacacttgcgcggacgtccgttgacccttgttcgttgtccg
cgcgattaccaggattgcttctatcagaaacacgtcaacgaacgcatgccgccgggcatc
ggtcgtgttccgatcgaggaagacggcggccgtgccatgtatatgacggcggactcgctc
gaggcattgcagggcctcgtgcagatgaacgcgctggaactgcacacgtggggcgcaacg
cgagaccggttggaccggcccgaccgtttgacctttgacctggatcccgatccttcattg
ccatggccgcgggtcgtcgaagcggcgcaactgatgagggaattgctcaccgaactcggg
ctcgcgtgttttctgaagacgacgggcggacacggcttgcacgtcgtcacgccaatccag
cgcaacatggattgggaggacgcgaaaggtttcgcaaaatcggtcgccgatcacatggcg
gccacgattccgcaacgattcatatccgtcatggcgaagcgggcgcggaaaggaaagatc
ttcatcgattacttgcgcaacgggcggggcgcgacggcgatcgccgcctattcgcccaga
gccaggtccggcgcaccggtgtcgatgccgatcgcctgggaagaattacactcggcgagg
ctgaaatcggatcacttcaccgtattgaatatagaggagcggctcaaggatcggacgcgc
gatccgtgggaggactatgcgcaatccgcgcggacggtgacgaacgcgatgaaagccaga
ctgtcgcgacggtga
DBGET
integrated database retrieval system
