Nitratireductor kimnyeongensis: KW403_17620
Help
Entry
KW403_17620 CDS
T07526
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nki
Nitratireductor kimnyeongensis
Pathway
nki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KW403_17620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nki03400
]
KW403_17620 (mfd)
Enzymes [BR:
nki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KW403_17620 (mfd)
DNA repair and recombination proteins [BR:
nki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KW403_17620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QZZ35534
LinkDB
All DBs
Position
complement(3709295..3712798)
Genome browser
AA seq
1167 aa
AA seq
DB search
MKLTNALKLPDAGAGAVTVDGVADGFEAFALAAAAREVTPNGPIIFVLRDGQRLPALIDT
LRFVDPGLPVLDLPAWDCLPYDRVSPGADASARRLAALSAMAELRTKPHRAVVIVSANAL
LQRMPPAEQIGTQGFFARPGNQVDMTALTTRLETSGFERVSTVRDVGEYAVRGGIFDLFA
PGWDEALRLDFFGDTLESIRAFDIATQRTTGQRKEVSLQAMSEITLSPEVISRFRRNYIE
TFGAPSRDDALYSAVSEGRRFAGMEHWLPLFHERLDSVLDYLPEAPMVFDHLAEEALGER
HALIVDHYEARRTQMEGTELGGAVPYKPVPPDTLYLDPKEIKAAGADRRVIHFTPFATPE
TSKARIYHAGAVAGRNFAEERADPNANVFDHAVKHIGTLRANGKRVLIAGWSDGSAERLS
QILSEHKLGNVVCVDTLAELEKLPSEKAAIGVLPLEAGFETAELAVIGEQDILGDRLVRR
AKKRKKASDFISEVATLSAGDIVVHADHGIGRFVGLKTIEAMGAPHDCLELRYAGDDRLF
LPVENIELLSRYGSDGPDTMLDKLGGVAWQSRKAKLKKKLLEMAGHLIRIAAEREMRPGV
RLAPPEGLYGEFAARFPYEETDDQQAAIDAVIDDLGSGRPMDRLICGDVGFGKTEVALRA
AFVAAMEGLQVAVVVPTTLLARQHFKTFRDRFAGLPLRVRQASRLVGSKELSETKKGIAD
GTVDIVVGTHALLGSAISFKNLGLLIIDEEQHFGVKHKERLKDLKSDIHVLTLSATPIPR
TLQLALTGVRELSLITTAPVDRMAVRSFISPVDPLLIRETLLRERYRGGQSFYVVPRISD
LAEVRAFLEEHVPELKVATAHGQLPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTAN
TLIVHRADIFGLSQLYQLRGRVGRSKVRAYALFTLPPNRTLTFTAERRLKVLQSLDTLGA
GFQLASHDLDIRGAGNILGEEQSGHVKEVGYELYQQMLEEAVAELKGSDEAVDTGWSPQI
TVGTAVMIPESYVSDLQLRLSLYRRIAELETPEEIDAFGAELIDRFGPLPQEVEHLLKIV
FIKALCRKANVEKLDAGPKGVVVHFRNQEFPEPVGLVRFIGEQGSLAKIRPDHSIVFIRD
WPTPEKRLAGSAVIMTQLVRLVEKKAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaccaatgctttgaaactgccggatgcaggtgctggtgccgtcacagtggat
ggcgttgccgacgggtttgaagccttcgccctggctgcagccgcgcgagaggtgactccg
aacggtccgatcatctttgtccttcgtgacggacagcgtttgcccgcgctcatcgatacg
ctccgcttcgttgatccgggacttcccgtgcttgatctgccggcatgggactgtctgccc
tatgaccgtgtttcgcccggtgccgacgcctcagcgcgcaggcttgccgccctcagcgcg
atggcggaactccgtacgaaacctcatcgtgccgtggtcatcgtcagcgccaatgcgctg
ctgcagcgcatgccaccggcagaacagatcggaacgcagggctttttcgcccgccccggc
aaccaggtcgatatgacagcgttgacgacccggcttgaaaccagcggattcgaacgtgtg
tccacggtgcgcgacgtgggtgaatatgcagttcgtggcggcattttcgaccttttcgcg
cccggctgggacgaggccctgcgtctcgatttctttggcgatacgctcgaatcaattcgc
gccttcgacatcgccactcagcgcaccaccggtcagcgcaaggaagtctcgctccaggcc
atgagcgagatcacgctttcgcccgaggtcatcagccggtttcggcgcaactacatcgaa
accttcggagccccctcgcgggacgatgcgctttacagcgcggtcagcgaggggcggcgt
tttgctggaatggaacactggcttccgctgtttcacgagcgccttgacagcgtgctcgac
tatctgcccgaagcacccatggttttcgaccatcttgccgaagaagcgctcggcgaacgg
catgcgctgattgtggatcactacgaggcgcgccgcacgcagatggaaggcacggaactc
ggaggcgccgtgccatacaagccggtcccgcccgataccctctatctcgacccgaaggaa
atcaaggcggccggcgcagataggcgcgtaatccactttacgccttttgcaacgcccgag
accagcaaggcgcgcatatatcatgctggtgccgtggccgggcgcaattttgcagaggag
cgtgccgacccaaatgccaatgtgttcgatcacgcggtcaagcacatcggaacgctgcgt
gccaatggcaaacgcgtgctgattgcgggatggagtgacggttctgccgaacggctttcc
caaattctttccgaacacaaactcggcaatgtcgtctgcgtcgatactttggcggaattg
gagaaacttccgtccgaaaaggcagctatcggcgtcctgccgctcgaggctggtttcgaa
accgcggagctcgccgtcatcggcgaacaagacattctgggcgaccggctggtgcgccgc
gccaagaaacgcaagaaggcttctgatttcatctcggaggtggcgacgctttcagcaggc
gacatcgtggttcatgccgaccacggtattggccgtttcgtcggtctcaagaccattgaa
gcgatgggcgcgccgcatgattgtctggagctgcgctatgccggcgatgaccggctgttc
ctgcctgtcgaaaacatcgaacttctttcgcgttacggttctgatggccccgacaccatg
ctcgacaagctgggcggcgtggcctggcagtcgcggaaggcgaagctcaagaagaagctt
ttggagatggcggggcatctgatccgcatcgccgccgagcgcgagatgcgccctggcgta
aggcttgctccgccagaaggcctttacggcgagttcgccgcgcgttttccctatgaggag
acggatgatcagcaggcggccatcgacgccgtcatcgacgatctgggttcgggccgcccc
atggatcgccttatctgcggcgatgtgggctttggtaaaacggaagtcgcgctgcgcgcg
gcattcgtcgccgccatggagggcctgcaggtggccgtcgtcgtgccaacgacactgctt
gcccgccagcatttcaagacgttccgggaccgttttgccggactgcctctgcgcgtgcgc
caggcttcgcgcctcgtcggttcgaaagagctttccgaaaccaagaaaggcatcgccgac
ggtacggtcgacattgttgtgggcacccacgctcttctgggcagcgcgatttcgttcaaa
aaccttggcctcctcattatcgacgaggagcagcatttcggcgtcaagcacaaggaacgg
ctgaaggatctgaagtccgacatccatgtcttgaccttgtcggccacaccgatcccgcgc
acgttgcaattggcgttgactggggtgcgtgaactctcgctcatcactacggcgcccgtg
gaccgcatggcagtgcgcagcttcatatctcccgtcgatccactcctcattcgcgagacc
cttctgcgcgagcgttatcgcggcggccagagcttttatgtcgtgccgcgcatttctgac
ctggcggaggtgcgcgcatttctcgaagagcatgtgccggaactgaaagtagccaccgcc
cacgggcagttgccgcccggtgaactcgacgacatcatgaacgccttctacgacgggcag
tatgatgttctcctgtccacgacaatcgtggaatcgggactcgatatccccacagccaac
acgctgatcgtgcaccgcgctgatatcttcggtctctcgcagctctatcagctgcgcggg
cgcgtggggcggtcaaaggtgcgggcctatgcgctcttcacgctgccgcccaaccggacg
ctcacattcaccgccgaacggcggctcaaggtgctccagtcgctcgacacgctgggcgcg
ggcttccagcttgcaagtcatgatctcgacattcgcggtgccggcaacatcctgggcgaa
gaacagtccggtcacgtgaaagaggtgggctacgagctctaccagcagatgctggaagag
gcggttgccgaactgaagggatcggatgaggcggtcgatacgggctggtcgccgcagatc
acggtcggtaccgccgtcatgatcccggaatcctatgtttcggatctccagttgcggctc
agcctctaccgccgcatagcagagctggagacacccgaagagatcgacgcctttggcgcg
gaactcatagaccgtttcgggccgcttccgcaggaagttgaacacctcttgaagatcgtt
ttcatcaaggcgctgtgccgcaaggccaatgtggaaaagctcgacgctggccccaagggc
gtggtggttcatttccgcaatcaggaatttcccgaacccgtcgggctcgtgcgcttcatc
ggcgagcagggttcgctggcaaaaatccggcccgatcacagcatcgttttcattcgtgac
tggccgacgccggaaaaacgtcttgccggctctgccgtcatcatgacgcagctcgtgcgg
ctggtggagaaaaaggcagcctaa
DBGET
integrated database retrieval system
