Niastella koreensis: Niako_5644
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Entry
Niako_5644 CDS
T01679
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nko
Niastella koreensis
Pathway
nko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Niako_5644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_5644
Enzymes [BR:
nko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Niako_5644
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Niako_5644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEW01876
UniProt:
G8TL35
LinkDB
All DBs
Position
complement(7043555..7046995)
Genome browser
AA seq
1146 aa
AA seq
DB search
MNLQELLNGYKNNPRLFSLADRLTFSQPQQVFCKNLHGSASAFVIGTIFQHEANSQLNHV
IVCEDSEAAAYMHNTLENLTQALNLFFFPSSFKNRKNFRLLNSSHVMLRTEALTRFSSPM
AGSNRVGALITYPEALFEKVVLPKTLAGNIIYLKSGDVIDVEALLRQLVDYGFSTTDFVY
EPGQFALRGGILDIYSFGNEKPYRIELFGNDVDSIRIFDPETQLSERKLLQVSIIPNVET
QFDEDAKISLFEFLPENTVYWFQDWELTKERLLTQEEDLQLFLDMQANNAVPKEAVEEDD
KTIKTSIKADEFISGSLKKQLANRHVVEFGYQPGFMEDSEPTLHSPLTIDFNTKDQPAFN
RQFDLLIKDLKSWEAKKFSLYLFAENPRQLERLNSIFEDLKAGIQFTPVPTSIHQGFIDE
DLKVICYTDHQIFQRYHKYKVKQAYNKNKAITLRTLRELQPGDYVTHIDHGVGIYSGLQK
LESNGKMQEAVRIIYRDSDILYVNINSLHKISKYTGKEGSVPKVNKLGSDAWNRLKEKTK
TKVKEIAFDLITLYAQRKAQQGFQHAPDNYMQTELEASFIYEDTPDQSKATADVKKDMES
PSPMDRLVCGDVGFGKTEIAIRAAFKSCCDGKQAAVLVPTTILAFQHFKTFSERLKDFPV
TVDYVNRFKSAKEKKDTLKRLEEGKIDIIIGTHALLGKEVKYKDLGLLVVDEEQKFGVAH
KEKIKTLRTNVDCLTLTATPIPRTLQFSLMGARDLSIMNTPPPNRQPIQTEVQVFNHDFI
RDAIYYETERGGQVFFIHNRVQGLSEMAALIQGLCPDLSIGFAHGQLEGHILEERILDFI
DKKYDVLICTNIVESGVDIPNVNTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPP
MSTLPPDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFEMYQKV
LEEAIKELKRTQFRELFKAEISKQEDYVQDCTIDTDLEILIPDSYVESITERLTLYTRLD
NCDNEEELQAFAVELQDRFGPIPQQVEDLFDTVRVRRLAVELGFEKMLLKDDTLKCYFIN
KADSPYFESDIFHNILTFIQTQTNKARLKQNGKLFMLVVSDMGTMQKMVRFLSQMKEFVN
KQETTA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgcaggagttgctcaatgggtataaaaataacccccgccttttttcactggcg
gacaggctcactttttcccaaccccaacaggttttttgtaagaacctgcacggaagcgcc
tccgcctttgtaatcggcactatttttcagcacgaagccaacagccagctcaaccacgta
atagtttgtgaagattcagaagcggctgcttacatgcacaatacgctggaaaacctcacc
caggcgttgaacctctttttcttccccagctcctttaagaacagaaagaatttccggttg
ctcaattcttcgcacgtgatgttgcgaacagaagcgcttacccggttttcttcccccatg
gccggcagcaaccgcgtgggcgcccttattacgtatccggaggcgctgtttgaaaaagta
gtgttgcctaaaaccctggcgggaaatattatttatctgaaatcgggcgacgtcatagat
gtagaagcgttgttgcgccagctggttgactatggcttttcaaccaccgattttgtatac
gaacccgggcagttcgccttacgcggcggcatccttgatatttattcattcggaaatgaa
aaaccttaccgcattgaattgtttggtaatgatgtggactccatccgcattttcgatcct
gaaacacagttgagtgagcggaaactgttacaggtaagcatcattcccaacgtggagacc
cagtttgacgaagatgccaagatctccctgtttgaatttcttcccgaaaacacggtgtat
tggttccaggactgggagcttaccaaagaaagactgttgacccaggaagaagacctgcaa
ctgttcctggacatgcaggccaacaatgccgtacccaaagaggcggtagaagaggacgac
aaaacaataaagaccagcataaaggccgatgagtttatttcaggttccctgaaaaaacaa
ttggccaatcgccatgtggtagagtttggctatcagccgggatttatggaggatagcgag
cccaccctgcactcaccactcaccattgatttcaacaccaaagatcagccggccttcaac
cgccagttcgatctgctgataaaagacctgaagtcgtgggaagcaaagaaattcagtctg
tatttgtttgcagaaaatccccggcagttagaacggttgaacagcatttttgaagacctc
aaagcaggcatccagttcaccccggtgcctaccagcatccaccagggatttattgatgaa
gacctgaaggtgatctgttataccgatcaccagattttccagcgctaccataaatacaag
gttaaacaggcttacaataagaataaggccattaccctgcgtaccctgcgcgaattacag
ccgggcgactacgttacccacatcgaccatggtgtaggtatttacagtggtctgcaaaag
ctggaatcgaacggtaaaatgcaggaagcagtgcgcatcatttaccgcgatagcgacatc
ctgtatgtgaacattaactcgctgcacaagatctcgaagtacaccggcaaggaaggtagc
gtacccaaggtgaacaaactgggcagtgatgcctggaacaggctgaaagaaaaaaccaag
accaaggttaaggaaattgcctttgatttgattaccctttacgcgcaacgtaaggcgcag
cagggctttcagcatgcaccggataattacatgcaaaccgagctggaagcttcctttata
tacgaagatacgcccgaccagagcaaggctacggccgatgtgaagaaggatatggaatcg
ccctcgcccatggaccggctggtgtgcggcgacgttggctttggtaaaacggagatcgcc
attcgcgcggcattcaaaagctgttgcgatggaaagcaggccgctgtactggtgcctacc
accatcctggcgttccagcattttaaaacattcagcgaacggctgaaagattttccggtt
accgttgattatgtaaaccggttcaaatcggccaaggagaaaaaggatactttaaaacgg
ctcgaagaaggtaagatagatatcattattggcacccatgccctgttaggcaaggaggtt
aaatataaagacctggggcttttggtcgttgacgaagaacagaaatttggggtggcgcat
aaagaaaagatcaagaccctgcgcaccaatgtagactgtttaaccttaacggcaacgcct
attccgcgtacgttacagttcagtttaatgggcgcccgcgacctgagtattatgaatacg
ccgccgcccaaccggcagcccatacaaacggaagtacaggtattcaaccacgacttcatc
cgcgatgccatttattatgaaaccgagcggggcggacaggtattcttcatccataaccgc
gtacagggattgtcggaaatggcggcccttattcagggcttgtgtcccgacctgagcatt
ggctttgcccatggccagctggaaggtcatatcctcgaagaacgcatacttgactttatt
gataaaaagtacgacgtacttatttgtaccaatatcgtggagagcggggtggatattccc
aacgtaaataccatcatcatcaacaacgcccatcactttggattaagtgatctgcaccag
ttacggggcagggtagggcgtagcaataaaaaggctttttgttacctgctggctcctccc
atgagtacgttgccgcccgactccagaaagcggttacaaacgctggagcagcacagtgag
ctgggcagtggcttccagatagccatgcgcgacctcgacatccgcggggcaggcaacctg
ttaggaggtgaacaaagcggctttatggccgaaataggttttgaaatgtaccagaaggtg
ctggaagaagccatcaaggagttgaagcgtacgcagttcagggaattatttaaggcagaa
atttccaaacaggaagattatgtacaggattgcaccatcgataccgatctggagatcctg
atccccgatagctatgtagaaagcatcaccgaacggttaacgttatatacccgcctggat
aattgtgataacgaagaagagctgcaggcctttgccgttgagttgcaggacaggtttggg
ccaataccccagcaggtggaagacctgtttgataccgtgcgcgttcgccgcctggccgta
gagctgggttttgaaaaaatgttgttgaaagacgacacgctcaaatgctatttcatcaat
aaagccgatagcccttattttgagtcggatattttccataacattctcacctttattcaa
acccaaacgaataaagcccgccttaagcagaatggaaaattatttatgctggtagtatca
gatatgggcaccatgcaaaagatggtacgcttcctgtcgcaaatgaaagagtttgtgaac
aagcaggagactacggcttaa
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