Nomascus leucogenys (northern white-cheeked gibbon): 100579905
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Entry
100579905 CDS
T03265
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100579905 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nle03000
]
100579905 (KDM2B)
04121 Ubiquitin system [BR:
nle04121
]
100579905 (KDM2B)
03036 Chromosome and associated proteins [BR:
nle03036
]
100579905 (KDM2B)
Enzymes [BR:
nle01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100579905 (KDM2B)
Transcription factors [BR:
nle03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100579905 (KDM2B)
Ubiquitin system [BR:
nle04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
100579905 (KDM2B)
Chromosome and associated proteins [BR:
nle03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100579905 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100579905 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
100579905
NCBI-ProteinID:
XP_030677384
LinkDB
All DBs
Position
10:complement(88614731..88768374)
Genome browser
AA seq
1305 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSHLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEEACDQQPQEEEEKDEEGEGRDRAPKPPTDGSTSPTSTPS
EDQEALGKKPKAPALRFLKRTLSNESEESVKSTTLPVDYPKTPTGSPATEVSAKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVT
WPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSIC
NEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGLLRRKSDDVHLRKKRKYEKPQE
LSGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRS
WKNAEDRMALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKK
KVKMRRKRRLPNKELSRELSKELNHEIQRTENSLANENQQPIKSEPESEGEEPKRPPGIC
ERPHRFSKGLNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCMQMERHVIRPPPISPP
PDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCK
SITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSS
CPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLR
LIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKR
CGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagcgatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctagag
gagaagcttcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtacagagagaagctctcagggttcccctgatatttcgagaaaag
gatggactgggaattaagatgcctgaccctgatttcacagtccgagacgtcaaactccta
gtggggagccggcggcttgtggacgtgatggatgtgaacacccagaagggcacggagatg
agcatgtcccagtttgtgcgttactacgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagcttagagttcagccacaccaagttggagcacttggtcaagcgtccgact
gtggtagacctggtggactgggtggacaacatgtggccccagcatctgaaggagaagcag
acagaagccacgaacgccattgcagagatgaagtacccgaaagtgaagaagtactgtctg
atgagcgtgaaaggttgtttcaccgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggtgggaagattttttggctgattcctccaacgctgcacaatttg
gcgctgtacgaggagtgggtgctgtcaggcaaacaaagtgacatctttctgggagaccgt
gtggaacgatgccaaagaattgagctgaagcagggctacacatttttcatcccttctggt
tggatccatgccgtctacacccctgtagactctttggtgttcggcggaaacatcctgcac
agttttaacgtgcccatgcagctgcggatctacgagatcgaggacaggacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcctggagagatacgtg
tactgtgtgacccagcgctcccacctcactcaggaataccagagggagtcgatgcttatt
gatgccccgaggaagcccagcatagacggcttctcttcggattcctggctggagatggag
gaggaggcctgtgatcagcagcctcaggaggaggaggagaaggacgaggagggcgagggc
agggacagggcacccaaaccgcccaccgatggctccacttcacctaccagcacgccctcc
gaggaccaggaggccctcgggaagaagcccaaagcacctgccctgcgattcctcaaaagg
actttgtctaacgagtcggaggagagtgtgaagtccaccacattgcccgtagactacccc
aagacccccaccggctctcctgccacggaggtctctgccaaatggacccatctcaccgag
tttgaactgaagggcctgaaagctctggtggagaaactggaatccctcccggagaacaag
aagtgtgtccccgagggcatcgaggacccccaggcactcctggagggtgtgaagaacgtc
ctgaaggagcacgcggatgatgaccctagtctggctatcactggggtccctgtggtgact
tggccaaagaagactccaaagaaccgggctgtgggtcggcccaaggggaagctgggcccg
gcctccgcggtgaagttggccgccaaccggacaacggcaggagctcggcggcgccggacg
cgatgccgcaagtgcgaggcctgcctgcggaccgagtgcggagagtgccacttctgcaag
gacatgaagaagttcgggggccccgggcgcatgaagcagagctgcatcatgcggcagtgc
atcgcgccagtgctgccccacactgccgtgtgccttgtgtgtggcgaggcggggaaggaa
gacacggtggaagaggaggaaggcaagtttaacctcatgctcatggagtgctccatctgc
aacgaaatcatccaccctggatgccttaagattaaggagtcagagggtgtggtcaacgac
gagcttccaaactgctgggagtgtccgaagtgtaaccacgccggcaagaccgggaaacaa
aagcgtggccctggctttaagtacgcctccaacctgcccggctccctgctcaaggagcag
aagatgaaccgggacaacaaggaagggcaggagcctgccaagcggaggagcgagtgtgag
gaggcgccccggcgcaggtcggatgagcaccccaagaaggtgccgccggacggcctcctg
cgcagaaagtctgatgacgtgcacctgaggaagaagcggaaatacgagaagccccaggag
ctgagtggacgcaagcgggcctcatcgcttcaaacgtcccccggttcctcctctcacctc
tcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagtctcacttac
ttccagcagcagctcaaacctggcaaagaagataagcttttcaggaaaaagcggcggtcc
tggaagaacgccgaggaccgcatggcgctggccaacaagcccctcaggcgcttcaagcag
gaacccgaggacgatctgcccgaagcgccccccaagaccagggagagcgaccactcccgc
tccagctcccccaccgcgggacccagcaccgaaggggccgagggcccggaggagaagaag
aaggtgaagatgcgccggaagcggcggcttcccaacaaggagctgagcagggagctgagc
aaggagctcaaccacgagatccagaggacggagaacagcctggccaacgagaaccagcag
cccatcaagtcggagcctgagagtgagggcgaggagcccaagcggcccccaggcatctgc
gagcgcccccaccgattcagcaaggggctcaacggcacaccccgggagctgcggcaccag
ctggggcccagcctgcgcagcccgccccgcgtcatctcccgacccccaccctccgtgtcc
ccgcccaagtgtatgcagatggagcgccatgtgatccggccaccccccatcagccccccg
cctgactcgctacccctggacgatggggcagcccacgtcatgcacagggaggtgtggatg
gccgtcttcagctacctcagccaccaagacctgtgtgtctgcatgcgggtctgcaggacc
tggaaccgctggtgctgcgataagcggttgtggacccgcattgacctgaaccactgcaag
tctatcacacccctgatgctgagcggcatcatccggcgacagcccgtctccctcgacctc
agctggaccaatatctccaagaagcagctgagctggctcatcaaccggctgcctgggctc
cgggacttggtgctgtcaggctgctcatggatcgcggtctcggccctttgcagctccagt
tgtccgctgctccggaccctggatgtccagtgggtggagggactaaaggatgcccagatg
cgggatctcctgtccccgcccacggacaacaggccaggtcagatggataatcggagcaag
ctccggaacatcgtggagctgcgcctggcaggcctggacatcacagatgcctccctgcgg
ctcatcatccgccacatgcccctgctctccaagctccacctcagttactgtaaccacgtc
accgaccagtccatcaacctgctcaccgctgttggcaccaccacccgagactccttaacc
gagatcaacctgtctgactgcaataaggtcactgatcagtgcctgtccttcttcaaacgc
tgtggaaacatctgtcatattgacctgaggtactgcaagcaagtcaccaaggaaggctgt
gagcagttcatagccgagatgtctgtgagtgtccagtttgggcaagtagaagaaaaactc
ctgcaaaaactgagttag
DBGET
integrated database retrieval system
