Nomascus leucogenys (northern white-cheeked gibbon): 105740366
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Entry
105740366 CDS
T03265
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle03030
DNA replication
nle03410
Base excision repair
nle03420
Nucleotide excision repair
nle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105740366 (LIG1)
03410 Base excision repair
105740366 (LIG1)
03420 Nucleotide excision repair
105740366 (LIG1)
03430 Mismatch repair
105740366 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nle03032
]
105740366 (LIG1)
03400 DNA repair and recombination proteins [BR:
nle03400
]
105740366 (LIG1)
Enzymes [BR:
nle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105740366 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
105740366 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105740366 (LIG1)
DNA replication proteins [BR:
nle03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105740366 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105740366 (LIG1)
DNA repair and recombination proteins [BR:
nle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105740366 (LIG1)
NER (nucleotide excision repair)
Other NER factors
105740366 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
105740366 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DUF1685
DDR
Presenilin
Motif
Other DBs
NCBI-GeneID:
105740366
NCBI-ProteinID:
XP_030676817
Ensembl:
ENSNLEG00000004264
LinkDB
All DBs
Position
10:complement(62373963..62431245)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKVALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPRPATCPENNASLSDTSPTDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEEAETLKESLTEAEVATEKEGEDGDQ
PTTPPKPLKTSEAETPTESVSEPEVATKQELQEEEEQTKPPRRAPKTLSSFFTPWKPAIK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLDCLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacagcagcagagagacagagccccctccaaaggtggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagtgaaggggaggaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccccgccccgtcctgccacatgtcctgaa
aacaatgcttccctctctgacacctctcccacggacagttccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgaggacgaggacagagaagccaagaggaagaaggaggaggaagaagcggagaccctg
aaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacggggaccag
cccaccacgcctcccaagcccctgaagacctccgaagcagagaccccgacggaaagcgtt
tcagagcctgaggtggccacgaagcaggaactgcaggaggaggaggagcagaccaagcct
ccccgcagagctcccaagacgctcagcagcttcttcaccccctggaagccagcaatcaaa
aaagaagtgaaggaagaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggacccatccggttacaatcctgccaagaacaactatcatcccgtggaagatgcctgc
tggaaaccgggccagaaggtcccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgctcggctccggatggtggagacgctgagcaacttgctgcgctctgtggtg
gccctgtcacctccagacctcctccctgtcctctacctcagcctcaaccaccttgggcca
ccccagcagggcctggagcttggcgtgggtgatggtgtccttctcaaggcagtagcccag
gccacaggtcggcagctggagtccgtccgggctgaggcagccgagaagggcgacgtgggg
ctagtggccgagaacagccgcagcacccagaggcttatgctgccaccacctccgctcact
gcctccggggtcttcagcaagttccgcgacatcgccaggctcaccggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctcagtggacggctgcgccttgggctggcagagcagtcagtgctg
gccgccctctcccaggccgtgagcctcacgcccccgggccaagaattcccaccagctgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggttcccgacctggaccgaattatccctgtgctg
ctggagcatggcctggattgtctcccggagcactgcaagctgagcccagggattcctctg
aagccaatgctggcccatcccacgcgaggtgtcagcgaggtcctgaagcgctttgaagag
gcagctttcacctgcgaatacaaatatgacgggcagagagcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggac
atcatcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacacc
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcgtctgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgctacctccctggac
actaaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgag
gggctgatggtaaagaccctggatgttgatgccacctacgagatcgccaagagatcacac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggtgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctatgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagccca
cgcccttacgtgcggatagatggcgccgtgactcccgaccactggctggaccccagcgct
gtgtgggaggtgaagtgcgcagacctctccctctctcccatctaccctgctgcacggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcccaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccagcaaggcgaggactcaggctctgaccctgaagatacctactaa
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integrated database retrieval system
