Candidatus Nitronauta litoralis: G3M70_16855
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Entry
G3M70_16855 CDS
T07016
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nli
Candidatus Nitronauta litoralis
Pathway
nli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3M70_16855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nli03400
]
G3M70_16855 (mfd)
Enzymes [BR:
nli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3M70_16855 (mfd)
DNA repair and recombination proteins [BR:
nli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3M70_16855 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPJ63451
UniProt:
A0A7T0G1Y4
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All DBs
Position
complement(3672683..3676120)
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AA seq
1145 aa
AA seq
DB search
MNSSVTSKEIFKDKHLERLSRLIEGDQLELTLEGLTGSSQGLFLAQFWNAFRRPLTIIAP
DTLHAENLLGDLRFFLKHHKLRQQPRLFPSWELLPYEPLSPLSEVSGERIDLLYKLGTGQ
CPILILTVEAALQKLIPRSLLDQMTYSLKVGDTADRELLEICLSENGYERTGLVETRNQF
GIRGDILDVFLPSHNHPVRVEFFGDEIESIRHFDVTSQISIEEIQSIDILPVHEIVLNKN
QVDSRIEKLREEADLRGIQPNRIEELTEKINCLKSFTGMEWLAPYFSERMESIFDYLPDS
TVLVMQEPDIVKEKSDQFCGLVEEEFDRSISRNDMVAPPEQLFLNTDVLFENFRKKPVLN
MAALKLHDDEQSAVVAFDIKSVPALYNHFDAFADSARQWQEEDQKVTVAAPTKGHVSRIN
ELVLDKHLSVGVESGLIHQGFHWPELGVVFVAEHEIFGRSHKHRHRRRARSTRFAKGFQD
LQAGDLLVHVDYGIGRYSKTKELKTGLGSGEFMEILFSGDEKLYIPMDGLASVQKYTGAG
DSHPPLSKLGTVAWKRQKKKAKESILKMARELVKVYAERQLSTSHVYKQDPVLMQEFSDS
FEYVETEDQISAIEDVLNDLENDKPMDRLICGDVGYGKTEVAMRAAFKVVLDKKQVAVLA
PTTILAQQHLNTFRERFRSWPVSIDMVSRFRTPAEQKKTIQKAKEGALDIIIGTHRLLSK
DVTFSNLGLLVIDEEQRFGVKHKEHLKKMRASVDILTLTATPIPRTLHFSLMGVRDLSVI
ETPPSDRLAVKSYIRKFDIQVVRDAILRELDRNGQVFFVHNQIQGIHSIAKLIQDAVPQV
RIGVAHGQLQEQMLEKTMRQFLDGELDLLLSTSIIESGLDIPNANTIIINRADRFGLAQL
YQLRGRVGRYKHQAYAYFLIPGTSVSDDARKRLEAIEEMSGLGAGFQLATKDLEIRGTGN
MLGKNQSGQIATIGFDLYCQMMEETVRELKGEKIETRIETELNLQIRGFIPKDYIPELNE
RLEFYRRLQMVVHEESLTGIIKEMKDRCGALPEPVEKLKTLIEIRLLCQLLHISNARLNR
NQVSFQIEKGTPIDPGKLAPLLGKRLTILGEFQMILTVDVGGWKENARQILDCLKQIRET
LDDES
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctccgttacttcaaaagaaatttttaaagacaagcatctggaacgtctgagc
aggctgattgaaggagatcagctggaactgactctggaggggttgaccggatcctcgcaa
ggtttgtttcttgcgcaattctggaatgcttttcgacgtcctttaaccatcatcgctccc
gatacgttgcacgcagaaaacctgttgggagatctacgtttttttctgaagcaccataaa
ctcaggcagcagccccggttattcccttcctgggaattacttccctatgaaccattgtct
ccattaagtgaggtttcgggggagcgtatcgatttgctttacaaattgggtacggggcaa
tgtcccatcctgatattgacagtggaagcggcattgcaaaaactgataccacgctcgttg
ctggatcaaatgacttatagcctgaaggttggtgatacggctgaccgagagctgctggaa
atctgtctttctgaaaacggttacgaaagaaccggactggtcgaaacgcgcaatcaattc
gggattcgcggggatattctggatgtgtttctaccctcacacaaccatcctgtccgggtt
gagttttttggagatgaaattgaatcgattcgccactttgatgtgacctcccaaatttcc
attgaagagattcaatcaatcgacatcttacctgtccatgaaattgtgctgaacaaaaac
caggtagattccagaattgagaagctcagggaagaggcagacttaagggggattcagccc
aatcgaatcgaagaactcacagaaaaaatcaattgcctgaaatctttcacggggatggaa
tggctggctccctatttttccgagaggatggagtccatttttgattatttgccggattcc
acggttctggtgatgcaggagccagatatcgtgaaggagaaaagcgaccagttttgcgga
ttggtggaagaagagttcgaccgctccatcagccggaacgatatggtagccccccccgag
caattgtttttaaatacggacgttctttttgaaaacttcaggaagaagcctgtactaaat
atggcagcgcttaagttgcatgacgatgagcaaagtgcagtggtggctttcgatattaaa
tcggttccagccttatacaaccattttgatgcctttgctgattctgccaggcaatggcag
gaggaagaccagaaagtaacagtcgctgcaccgacaaaggggcatgtttcacgaatcaat
gaactggttctcgacaagcatctgtcggtgggggtcgagtcagggttgattcaccaggga
tttcattggccggaactgggcgtagtatttgttgcggaacatgaaatctttggccgctct
cataaacaccggcatcgaaggcgagccaggtcgactcgctttgccaaagggttccaggac
cttcaagcaggcgacctcctggtgcatgtcgattacgggatcggtcgatacagtaagacc
aaagaacttaagaccggtttggggagcggtgagttcatggagatattgttttctggagat
gagaaactttatatcccaatggacggcctcgcttcggttcaaaaatacacaggagcgggg
gattctcatccgcctcttagtaagctgggaacagttgcctggaaacgccaaaagaaaaag
gcaaaagagtctattctgaaaatggcgcgggaactggtcaaggtttacgcggagcgacag
ctttcaaccagccatgtgtacaagcaggatccagtattaatgcaggagttttcagacagc
tttgaatacgtcgagactgaagatcagatcagtgccatagaagatgtgttaaatgacctt
gaaaatgataagccaatggaccggttgatttgtggtgatgtgggttatggcaagacagaa
gtcgccatgcgcgcggcttttaaagtggtgctggataaaaagcaggtggcggttctggct
ccgacaaccatcctggcccagcagcacctcaatactttccgggaacgtttccgaagttgg
ccggtttcgattgatatggtcagccggtttcggacgccagcagaacaaaagaaaacaatt
caaaaggcgaaagaaggtgctctcgatataattattggtacccatcgtctgctttcaaaa
gacgtgacattttccaacctcggtttactggtaatcgacgaggaacagagatttggagtg
aagcataaagagcatttgaaaaaaatgcgtgcttcagtcgatattcttactctgactgcc
accccgattcccaggaccctccatttttccctgatgggggtacgtgatctgagtgttatc
gaaacaccgcctagcgaccggctggcagtaaaatcctacattcgaaaatttgatatccag
gtggtgcgcgatgccatactgcgcgaacttgatcgaaacgggcaggtgttttttgtgcac
aaccagatacaggggatccattccattgccaaactgattcaggatgcggtgccgcaagtt
cgaattggtgtggcccacggacagcttcaggagcaaatgctggaaaagaccatgcgccaa
tttctcgatggggaacttgacctgctgttgtcgacttctattatcgaatccggtctcgac
atacccaatgcgaacaccattatcatcaacagggctgatcgatttggattggcccagttg
tatcagttaaggggcagggtggggcgctataagcatcaagcctatgcttacttcctgata
cctggaacttctgtcagcgatgatgctcgaaaacgactggaagcgatagaggaaatgagc
gggctgggagcgggttttcaactcgctacgaaggacctcgagatacgggggaccgggaat
atgcttgggaaaaaccagtcaggtcagattgccacgattggatttgatttgtactgtcag
atgatggaagagaccgtacgtgaattaaaaggtgaaaaaatcgagacccggattgaaaca
gaattaaatctgcagatacggggttttatacccaaagactatattcctgaacttaacgag
cgtcttgaattttatcggcggctgcaaatggtggttcatgaggaaagcctgaccgggata
attaaggagatgaaggatcggtgtggggctcttccggaaccggttgagaaattaaagacc
ctcatagaaattcgcctgttatgccaattgctccatatttcgaatgcgcgactgaaccgg
aatcaggtaagctttcaaatagagaaaggcaccccaattgaccctggtaaactggctcca
ttacttgggaaaagactcaccatactgggtgaattccaaatgattcttacggttgatgta
ggaggctggaaagaaaacgcccggcaaattcttgattgtctcaaacaaatccgtgaaacc
ctggacgacgaaagttaa
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