Neodiprion lecontei (redheaded pine sawfly): 107222388
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Entry
107222388 CDS
T09006
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107222388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nlo03041
]
107222388
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107222388
Spliceosome [BR:
nlo03041
]
Complex A
U2 snRNP components
U2 related factors
107222388
Complex B
107222388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
107222388
NCBI-ProteinID:
XP_015517226
EnsemblRapid:
ENSNLCG00000012579
UniProt:
A0A6J0BR29
LinkDB
All DBs
Position
1:complement(34368666..34374102)
Genome browser
AA seq
1027 aa
AA seq
DB search
MVRSGEKERHYRRRSRSRSASPEKKRRRSRSRDREREKTRHKERRSRSRERERERGDRKE
RTDRERERDRKRGDSKEKRLTGSKSSRSGKDRSNRSRSRERKDKDKGDTEDLPFDHTKLD
KEEEQKRLELEMQKRRERIERWRAERKKKELEATKKDGKSSILANLQLPMKKWSLEDDSD
EETPVILNSTKEIKEEGDIKEELEVIPEEIKIQEEEVDPLDAFMAEVQEEVRKVNKLDPN
RSKPANNGTGTGNTQSGGVVIVTGVAKKQVAKQKGELIEQNQDGLEYSSEEEGENLHETA
AGIANKQKRELAKVDHAATEYQPFRKAFYVEVPEIARMTPEEVEVYKEELEGIRVKGKGC
PKPIKSWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFL
LPMFRHILDQTPLVDGDGPIALIMTPTRELCMQIGRDSKRFTKSLGLSHVCVYGGTGISE
QIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIM
ENVRPDRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFY
KLLEVLGHYQDKGSTIVFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTIMDFKA
GRTKLLVATSVAARGLDVKHLVLVLNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITPEQ
ERYAGDILRAHELAAVPVPEPLRQLWEGYKTRQAADGKKVHTGGGFSGKGFKFDESEAAL
ANEKKKFQKAALGLQDSDDEDIENDIDQQIESMLAPKRTVREISRPSVANISVPGQPVPS
ATDKLELARRAASKINIAKNLGAEAKGATQQAAEAILKGAGPTNLITAKIVAEQLAAKLN
TKLNYQPREEDLVEGEGEPGEQTFRKYEEELEINDFPQQARWRVTSKEALAQISEYSEAG
LTVRGTYITPGKAPPEGERKLYLAIESTSELAVSKAKAEVSRLIKEELIKLQSSGTHTGS
RGRYKVL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggttcgaagcggtgaaaaggagaggcactaccgaaggaggtccaggtcccggtctgca
tcgccagagaagaaacggagaagatccaggagccgagaccgagaaagagaaaagactcgt
cacaaggaacgtcgaagccgatccagggaaagagagcgcgaaaggggcgataggaaggaa
cgtacggacagggaaagagaacgtgatagaaaacgtggcgacagtaaagaaaagcgtctt
acaggctcaaaatcctcgcgctcgggtaaagatcgatcgaacagatcacggtcacgagaa
cgtaaggacaaagacaaaggtgacactgaggatttgccatttgaccacacaaaattggat
aaggaggaggaacaaaaaaggctggagttggaaatgcaaaaacgacgtgaaagaatagaa
agatggcgtgccgaaagaaagaaaaaggaattagaagctaccaaaaaggatggaaaatcg
tctatcttagcaaaccttcagcttcctatgaaaaaatggtccctagaagacgacagcgat
gaagagactcccgtcatcctcaacagtaccaaagaaattaaggaagaaggagatatcaaa
gaagaactcgaggtgataccagaagaaattaaaatacaggaagaagaagtcgatcctctc
gatgctttcatggctgaggttcaagaagaagtacgaaaagttaataaactagaccctaac
cgatcgaaaccggccaataatggaacaggtactggaaacacacagagtggtggagtggtt
atagttactggtgtagctaaaaaacaggttgcaaagcagaagggagaattaatagaacag
aatcaggatggattggaatattctagtgaagaagaaggtgaaaaccttcacgaaactgcc
gctggaatagccaataaacaaaaacgtgagctggccaaagttgatcacgcagcaacggaa
tatcaaccattcagaaaagcgttttacgttgaagttcctgaaattgcaagaatgacgcct
gaagaagtagaagtatataaggaggagcttgagggaatccgtgtaaagggaaaaggttgt
ccaaagcctatcaaatcttgggcccaatgtggggtcacgaaaaaggagttggaagtatta
aaaaagctcggttatgaaaaacctacaccaatacaatgtcaagccattccagcgatcatg
tctggccgcgatttaatcggtattgcgaaaactggaagtggtaagacactagcctttctt
ttgccaatgttcaggcacatacttgatcaaactccgttggtggatggcgatggacctatt
gcgttgatcatgacaccaactagggaactctgcatgcaaattggccgagactcaaaaaga
tttacaaaatccttgggcctctctcatgtatgcgtatatggtggtaccggaatttcggaa
cagatagcagaactgaaaagaggtgcagaaatcattgtatgcacacctggtagaatgatt
gacatgctggctgccaacagcggacgtgtgactaatttgagaagagtgacttatgtcgtt
ttggacgaggctgaccgaatgtttgatatgggttttgaaccgcaggtaatgcgaataatg
gaaaatgtcaggccagaccgccaaacagtcctcttcagtgctacattccctcggcaaatg
gaggccttagctagacggatacttactcgtcccgtagaagttcaagtgggtggtcgttct
gtggtatgtaaagacgttgaacagcacgtcgtagttcttgaagaggatcaaaagttttat
aagcttctcgaagtgctgggacattatcaggataaaggctctacgatagtttttgtggac
aagcaagagaatgcggatacactgttgaaagacctaatgaaagcttcgtactcatgcatg
tctctacatggtggaattgatcagtgcgatcgagattctactattatggattttaaagct
ggtagaacgaaattgttggttgccacttcagttgcagccagaggacttgatgtaaaacat
ctcgttcttgtcctgaactatgactgtccaaatcattatgaagattacgttcatagatgt
gggaggactggacgtgctggaaacaagggatatgcttacacgtttatcacacctgaacaa
gaaagatatgcgggtgatattctacgtgctcatgaattagcagctgtaccagttccggaa
ccgttgcgtcaactttgggaaggttacaaaactcgtcaggcagctgacggtaagaaagta
cacaccggaggaggtttcagcgggaaaggtttcaagtttgatgaatcagaggcagctctg
gcgaatgaaaagaagaaattccaaaaagctgcgctaggtttgcaagactccgatgatgaa
gacattgaaaatgacattgatcagcagatcgaaagtatgttagcaccaaagcgaactgtt
cgcgaaatttccaggccatccgtggcaaatatttctgttcctggacaacctgtaccaagt
gctacagacaaattagaacttgcgaggagagccgcatctaaaattaacattgccaaaaat
ctgggtgctgaggcgaagggggcaactcaacaagctgcagaagctattctcaagggtgca
ggtcccacaaatcttatcaccgccaagatagtagctgagcaactcgctgcaaagttgaat
acgaaactgaactaccaaccgagagaagaagatcttgtcgaaggggagggtgaacctggt
gaacagactttccgaaaatatgaagaagagcttgagatcaatgactttccgcaacaagcg
aggtggcgcgttacaagcaaagaagctctcgctcaaatttcggaatattcagaagccgga
ctcactgttcgagggacatatatcacaccgggaaaagctccgccggaaggtgaaaggaag
ttataccttgcaattgaatcgaccagcgaattggctgtcagtaaagcaaaggcggaggta
tcccgacttattaaagaagaactcattaaactccagtcgtcgggaacgcacacaggatcg
cggggacgatataaagttttataa
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