Nocardioides marmotae: HPC71_05455
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Entry
HPC71_05455 CDS
T09088
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HPC71_05455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_05455
Enzymes [BR:
nmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HPC71_05455
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HPC71_05455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QKE00587
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All DBs
Position
1147045..1147956
Genome browser
AA seq
303 aa
AA seq
DB search
MSPERQEVAVEVDGRRLRISSLDKVLYPATGTTKGEVLHYYAQVAPVMLPHLADRAVTRI
RWPHGVQDGSFFEKNVPAGAPSWVRTATVPTTGSRGSSRNGDKIVFPVVEDLATLTWLVN
LAALELHVHQWTVGRNGRPRNADRLVIDLDPGEPAGLHECCQVALMVREALAERDLDCKP
VTSGSKGLHLYADLPGRMPSEGSTALAKEVAETLQKQHPTLVTATMTKARRSGKVFLDWS
QNAASKTTISPYSLRGRERPTVATPVTWAEVEEGAEDEEGLRQFRYDEVLDRVADLGDLF
ATD
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggagcggcaggaggtcgccgtcgaggtcgacggccgccggctgcggatcagc
agcctggacaaggtgctctacccggcgacggggacgaccaagggcgaggtgctccactac
tacgcccaggtcgcgccggtgatgctgccgcacctcgccgaccgcgcggtgacccggatc
cgctggccgcacggggtgcaggacggcagcttcttcgagaagaacgtgcccgccggcgcg
ccgtcgtgggtgcgcaccgcgacggtgccgaccaccggcagccgcggcagctcccgcaac
ggcgacaagatcgtcttccccgtcgtggaggacctcgcgacgctcacctggctggtcaac
ctcgccgcgctcgagctgcacgtgcaccagtggaccgtcggtcgcaacggccgcccccgc
aacgccgaccggctggtcatcgacctcgaccccggcgagcccgccggcctgcacgagtgc
tgccaggtggcgctgatggtccgcgaggcgctcgccgagcgggacctggactgcaagccg
gtcaccagcggcagcaaggggctccacctctacgccgacctcccggggcggatgccgtcg
gagggctccacggcgctggccaaggaggtcgccgagaccctccagaagcagcaccccacc
ctcgtcacggccacgatgaccaaggcccgccgctcggggaaggtcttcctcgactggtcc
cagaacgccgcgtccaagacgacgatctcgccctactccctgcgcgggcgcgagcggccc
accgtcgccacgccggtcacctgggccgaggtcgaggagggcgcggaggacgaggagggg
ctccgccagttccggtacgacgaggtgctcgaccgggtcgcggacctcggcgacctcttc
gcgaccgactga
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