Nomia melanderi (Alkali bee): 116425785
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Entry
116425785 CDS
T07404
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116425785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nmea03041
]
116425785
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116425785
Spliceosome [BR:
nmea03041
]
Complex C
Other components
Step II factors
116425785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SLFN-g3_helicase
AAA_30
ResIII
T2SSE
ABC_tran
Sigma54_activ_2
AAA_16
PhoH
AAA_24
Sigma54_activat
ATPase_2
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
116425785
NCBI-ProteinID:
XP_031829798
LinkDB
All DBs
Position
Unknown
AA seq
1144 aa
AA seq
DB search
MDVSSDSSLYRLEGTDKNQSGGLIIRKKPSDHTFKKPQMSMLGLDKLAKRKRQENAQEPN
SSRSISPESEIKERKYRSYAEETPTHTGGVNSEAQRRLESRLKHQRLSAQDKHHRHSRRD
HSRDSDSRRRDRSKDRDRERERSRSRGSVRQTPLRFKDEPQTPVFKTKDPTSRSNWDDDE
DEEPRKSSWDHPTPNLYNSRDGRESTRSEFTPSYKYNSWNKDKGSGATPMVDGEEKELWE
EEQQRLDREWYALDDGENHAFADVSEEYTRKKEMELEAKRQKRLSAQQRQINKDNELWER
NRMLTSGVVSSLDHDDDPDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSD
MALVARKGSALVRAYREQKERRRAQKKHWELAGTHIGNIMGVRDRNKEDKEDPGQEHDFK
AGQKYARHIGADEVTGEAKYRSIQYQRRSLPVFAVRQELLNVIRENSVVVIIGETGSGKT
TQLTQYLHEDGYSRNGIIGCTQPRRVAAMSVAKRVSDEMATTLGDKVGYAIRFEDCTSKD
TVIKYMTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIV
TSATMDSSKFSAFFGNAATFQIPGRTFPVEILHAKNSVDDYVDAAVKQVMQIHLQPRSGD
ILVFMPGQEDIEVTCEALKERLAEIESAPLLSILPIYSQLPSDLQAKIFQRSEGGLRKCV
VATNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGP
GTCYRLYTRRQYMDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILN
SLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPS
IFYRPKGREEDSDSAREKFQVPESDHLTYLNVYNQWKANGYSSSWCNDHFIHAKAMRKVR
EVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLH
PTSALFGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKR
RKAMQHLHEMEGQMKEAEEEMKARAQEQLEREQASIRKKEILTPGIREPGTPAPYRKTPG
RLGL
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatcaagtgattcaagtttatataggttagaaggtactgacaaaaatcagtct
ggaggtttgattatccgtaagaaaccctctgatcacacattcaaaaagcctcagatgtcc
atgttggggcttgataagctagcaaaacgaaagagacaagaaaatgcacaagagccaaac
tcgtcaagatcaatttcaccagagtctgagattaaggagagaaaatatagatcgtacgcc
gaagaaacaccaactcatactggtggagtaaattctgaagcccaaagaagactagaatca
cgattgaaacatcagagattaagcgcgcaagacaaacatcacaggcatagtcgtagggat
catagcagagacagtgattctagaagaagggacagaagtaaagacagggatagagaaaga
gaaaggagtagaagcagaggtagtgttagacaaactcccttgagattcaaagatgaacca
caaacaccagtgtttaaaacaaaggatcctacgtccagaagtaattgggatgatgatgaa
gatgaagaaccaaggaagtcgagttgggatcatccaacgccaaatctttataacagcaga
gatggccgtgaaagtaccaggagtgaattcactccttcatataaatataattcctggaat
aaagataagggcagtggcgctacacccatggttgatggagaagaaaaagaattgtgggaa
gaagagcaacaaagattggatagggaatggtacgccttagacgacggggaaaatcatgcg
tttgccgatgtttccgaggaatatacgcggaagaaagagatggagcttgaagcgaaaagg
cagaaacgtctctctgcgcaacagagacaaataaataaggacaacgaattatgggaacgt
aacagaatgttaacatccggtgttgtaagttcattggatcatgacgatgatccggatgat
gaaggggaaactagagtgcatcttttagttcataatgtcgttccaccgtttctggatggt
cgaatcgtgttcaccaaacagccagagcctgtagtacctgttcgtgatcctacgtctgac
atggccctcgtcgcgagaaagggttcagctttagttcgagcatatcgtgaacagaaagaa
cgacgtagagctcagaagaagcattgggaattagctggaactcatattggcaatattatg
ggcgttcgcgacagaaataaggaagataaggaagatccaggacaagaacacgatttcaag
gctggccagaaatacgctcgtcacataggagccgacgaagtcaccggagaagctaaatac
agatccattcaatatcaaaggaggagtctacctgtattcgctgtacgtcaggaactgtta
aacgttattagggagaacagcgtggtagttataatcggagaaaccggtagtggaaaaact
acgcaattaacgcagtacctccacgaggacggttatagtcgcaacggaataattgggtgt
actcaacctagaagagtagcagctatgtctgtagccaagagagtctccgatgaaatggct
actacgttaggggacaaagttggttacgccattcgtttcgaggactgtacttcaaaagat
actgttatcaagtatatgaccgatggtattttattaagagagagtttaagggaaggagac
ttggaccgatacagcgtcatcattatggacgaagctcacgagagatccttatccactgac
gtgttattcggcttgctcagagaagtcgttgccaggcgacacgacttaaagttaatcgtg
acatccgccacaatggactccagcaaattctcagcgttcttcgggaacgctgcgacattt
caaatcccaggtcgcacgttccccgttgagatactgcacgctaagaattcagtggacgac
tacgtggacgccgctgtgaagcaggtgatgcagatacacttgcagccacggtccggcgac
atattggtatttatgcctggccaagaggacatcgaagtcacctgtgaggcactgaaggag
cggctggcagaaatcgagtcagctccgttactctcgatcctgccgatctattcgcagttg
ccctcggacttgcaagctaaaatcttccagcgttcagagggtggtctacggaaatgcgtg
gtagctacgaatatagcggaaacttcgctaaccgtggacggtatcgtcttcgtcgtcgac
tccggatactgcaaattgaaggtttacaatccaaggatcggtatggacgctttgcaggtg
taccctgtgtccagagccaacgctgatcaaagagcgggaagagccgggcgtaccggtccc
ggcacgtgctacagattatacacgcgtagacaatacatggacgaattgcttttaaccgga
gtcccagaaatacaacggaccaacctcgcgaacacagtattactgttaaaatcgttaggc
gtgcaggacttgttagcgttccatttcatggatcctccgcctcaggacaacatcttgaat
tctttgtatcaattgtggatactgggtgcgcttgaccatacaggccgtctaacccctctg
ggacgtcaaatggcggagtttcccttggatcctcctcagtgtcagatgctgatagttgcc
tctcagcttggttgcaccgctgatatacttattatagtttcaatgttatcggtgccgtct
atattttaccggccaaaggggcgcgaggaggattccgattcggcgagagagaagttccaa
gtgccggaatccgatcacttgacgtatttaaacgtgtacaatcaatggaaagcgaacggt
tactccagttcatggtgcaacgaccatttcattcatgctaaggctatgcgcaaagtgaga
gaagtgcggcagcagctcgaagagattttgaagcaacagaagatggaggtcgtgagctgc
ggcactgactgggacatcgtcaggaagtgcatctgttccgcgtacttccaccaagcggca
cggctgaagggtatcggcgaatatgttaattgccgtaccgggatgccttgtcatcttcat
cctacctccgctttgttcggaatgggattcacaccggactacgtggtgtaccatgaactc
gttatgacggctaaagagtacatgcagtgcgtcaccgctgtcgatggacactggctggca
gaattgggccctatgttcttcagcgtaaaggaaaccggaagaagcggacgggcaaagagg
cgtaaagcgatgcaacatttgcacgaaatggaagggcaaatgaaggaggcggaagaagag
atgaaagctagagctcaggaacagcttgaacgagagcaggcttccattaggaagaaagaa
atattgactcctggaatcagagagccgggaactccggctccttaccgtaaaactccaggc
agattaggattataa
DBGET
integrated database retrieval system
