Numida meleagris (helmeted guineafowl): 110390397
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Entry
110390397 CDS
T06015
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03030
DNA replication
nmel03410
Base excision repair
nmel03420
Nucleotide excision repair
nmel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110390397 (LIG1)
03410 Base excision repair
110390397 (LIG1)
03420 Nucleotide excision repair
110390397 (LIG1)
03430 Mismatch repair
110390397 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmel03032
]
110390397 (LIG1)
03400 DNA repair and recombination proteins [BR:
nmel03400
]
110390397 (LIG1)
Enzymes [BR:
nmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110390397 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
110390397 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110390397 (LIG1)
DNA replication proteins [BR:
nmel03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110390397 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110390397 (LIG1)
DNA repair and recombination proteins [BR:
nmel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110390397 (LIG1)
NER (nucleotide excision repair)
Other NER factors
110390397 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
110390397 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
110390397
NCBI-ProteinID:
XP_021237347
LinkDB
All DBs
Position
LGE64:288235..295647
Genome browser
AA seq
776 aa
AA seq
DB search
MQRRITSFFAPPRAADGAVPAHAQKLERNPPEECGQERRDPDGSADTTSPGSSSAPVPPT
SPRAPCCPSTPQQPGDRDGDSNGDRDGAPASKRCRQSPGDQDRGPPPAPKAPAPNSHIPV
EPSQYDPSRSGYHPVQDACWGHGHSVPYLAVARTFERIEEASSRLKIIETLTNLLRSVVA
LSPSELLPCLLLCLNRPGAASEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGL
VAESSRCTQRTVVPPAPLSASGVLGKLREMAAMSGSASATKKIDIIKGLFVACRHSEARY
LVRSLSGKLRIGLAEQSVLTALAHAVALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSR
ILKQTFCELPDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCISELLKRFEEA
AFTCEYKYDGERTQIHVLESGAVFIYSRNQENTTAKYPDLVQRIPKMLKPGVRSCILDAE
AVAWDKVTKQLQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRRL
LRQSFEEVEGEFLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHK
WLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFT
EESLEKHYNFLKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGL
VDEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGDEEFY
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcggatcacgtctttcttcgccccccccagggctgcagatggcgccgtccca
gcgcatgcgcagaagctggagcggaacccccccgaggagtgcggccaggaacgtcgggac
cccgatgggagcgcggacaccacatctcctggcagcagctctgcccctgtaccccccaca
tcccctcgtgccccctgctgtccctccaccccacagcagccaggagacagggatggggac
agtaatggggacagggacggtgcccccgcatccaagcgctgccgtcagtcacccggtgac
caggacaggggacctccccctgcccccaaagctccagcccccaacagccatataccagtg
gagccgtcccagtatgaccccagcaggagtgggtaccacccagtgcaggatgcgtgctgg
gggcatgggcacagtgtcccctacctggcggtggctcgcacctttgagcgcattgaggaa
gcctcatcccggctgaagatcattgagaccctcaccaacctccttcgttccgtggtggcc
ctgtccccctccgagctgctcccctgccttcttctgtgcctcaaccgtcccggtgccgcc
tctgaggggctggagctgggcatcggcgagaccctgctcacccgtgcccttgcccaggcc
actggccgccagctggctcagatccgcagtgaagcacaggacaaaggggatttggggttg
gtggctgaaagcagccgctgcacccaacgcacggtggtgccaccggccccgctgagtgcc
agcggtgtccttggcaagctgcgggagatggccgccatgtcaggcagtgcgtctgctacc
aagaagattgatatcatcaaggggctgtttgttgcctgccggcactcggaggcacgatac
cttgtccgatcactcagtgggaagctacgcattgggctggccgagcagtcggtgctcacc
gcgctggcacacgccgttgctctcaccccaccagggcaagagtggccgctggctgtggtg
gatgctgggcagagcatggcacccgatgcgcgcagaacgtggttggaggaacagagccgc
atcctcaagcagactttctgcgagctgccagactacgccgccattgtcccggtgctgctg
gagcacggcctggagcagctccccaagcactgcggcatcactccaggtgtccccttgaag
cccatgctggcccagcctgcccgctgcatcagcgagctgctgaagcgctttgaggaggct
gcgttcacttgcgagtacaaatatgatggagaacgaacccagattcacgtcctggagagc
ggggccgtcttcatctacagccgcaaccaggagaacacaactgccaaataccctgacctc
gtccagcgcatccccaagatgctgaagcccggcgtgcgctcgtgcatcctggatgcagaa
gcagtggcttgggacaaggtcaccaagcagctgcagcccttccaggtgctgatgacaagg
aagaggaaggatgtggatgctgctgccattaaggtgcaagtgtgcgtctatgcctttgat
ttgctgtacctcaatggggagccactggtgcgggagcccttggccacacgacgtcggttg
ttgcgacagtcattcgaggaggtggagggcgaattcctctttgccacctcaatggacacc
cgcagtgctgacgaggtctctgatttccttgacaaagccatcaaggcctcctgcgagggc
ctcatggtgaagacgctggaggtggaggccacctacgagattgctaagcggtcccacaag
tggctgaagctgaagaaggactacctggatggccttggggacacgctggacctcgttgtc
ataggtgcctacctgggcaagggcaagcgtgcaggcatctatgggggcttcctgctggcc
tgctatgatgaggagagtgaggagtaccagagcatctgcaagataggtactggtttcacc
gaggagagcttggagaaacactacaacttcctcaaggaacacgtgttgactcaaccgcgt
ccctattaccgctgggacaacgcagtggcccccgaccgttggctggcagccgtgcaggtc
tgggaagtgaaatgtggggacctctcaatttcccctgtctatagggcagctgtggggctg
gtggatgaggacaagggcatctcgctgcgcttcccgcggttcctgcgtgtgcgtggggac
aagaaacccgaggaggccaccagcagcacacaggtggccgagctctacaagaagcagcag
cagatccagaaccagcagcaggcggagaaaggggacgaggagttctattga
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