Neobacillus mesonae: CHR53_18085
Help
Entry
CHR53_18085 CDS
T06691
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nmk
Neobacillus mesonae
Pathway
nmk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHR53_18085 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmk03400
]
CHR53_18085 (ligD)
Enzymes [BR:
nmk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHR53_18085 (ligD)
DNA repair and recombination proteins [BR:
nmk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CHR53_18085 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
SLFN_AlbA_2
Abdominal-A
Motif
Other DBs
NCBI-ProteinID:
AZU63007
UniProt:
A0A3Q9QW86
LinkDB
All DBs
Position
3717483..3719327
Genome browser
AA seq
614 aa
AA seq
DB search
MKPMLPTLTFDIPVRPGWVYEVKYDGFRAILDWDSNGIKLTSRKGKSLLPQFPEIETFLI
QQEAKFKPFLPLQLDGELVSLENPYKANFSAIQVRGRLKAVKKINEQAVNSPCRLMVFDL
LKLAGKPLHSLSFEKRRHKLMELFQTLELDLTANTSNQQLLQLVMADDNFNAIWEKIVLF
DGEGIVAKNRESLWEEGKRSLQWLKYKNWKYVSCFVTSFDKTNGYFYIGVYNGNKIHGIG
QVLFGFKSEEKQALGQIIRQNMVSEDQQFVYVEPAICLEVKYLELYDNQLREPHFDRFRF
DLQPEECSYDKFMFAQKNLPKNLEITHPDKPLWDKQNILKADYILYLREVSPYILPFLKN
RLLTVIRYPHGMFGEAFYQKNCPDYAPDFVETMLADGINYILCNNLKTLIWLGNQLAIEF
HVPFHTIDSKGPSEIVFDLDPPSKEHFHLAVKAAILIKEVLDQLNLIGFIKTSGNKGLQI
YLPLPENEFTYDDTRLFTSFIAEYLISKDPDSFTIERMKKNRGNRLYVDYVQHGEGKTII
APYSLRGNEHGGAATPLYWDEVDEKLDPKTFTMLHALQRLKQLGDPFRSYFQTKEKQPFA
PVLEILKKGTAKKG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttccaacccttacctttgacattccagttcggccaggctgggtttat
gaggtgaaatatgatggcttccgggcaatattggattgggattcaaatgggattaaatta
accagccgtaaaggtaaatcgttattaccgcaattcccggaaatagaaacgtttttaatc
cagcaggaagccaaattcaaaccttttttaccgcttcagcttgatggtgaattagtttcg
ctggagaatccatataaagcaaatttttctgcaatccaagtgcgcggtcgcctaaaagcc
gtaaaaaaaatcaatgaacaagctgtaaattcgccgtgccgcctgatggtatttgatctt
cttaaattggcaggaaaacctttacattccctttcttttgaaaaacgaagacacaagctg
atggaattatttcaaacactggaactcgatctcacagcaaatacttccaaccaacaatta
ttgcagcttgtaatggcagatgataattttaatgctatatgggaaaaaatcgtattattc
gatggggaaggaattgttgctaagaacagggagagtctatgggaggaagggaaacgctcc
ttacaatggttaaaatataaaaattggaaatatgtaagctgttttgtcacttcttttgat
aaaacaaatggttatttttatatcggggtttacaatggaaataaaatccacggaatcggt
caggtgcttttcggctttaaatcggaggaaaagcaggcattggggcaaattatcagacaa
aacatggtaagtgaggaccagcagtttgtttatgtcgagcctgccatctgccttgaggtc
aaatatttggagctttatgacaatcagctgcgggaaccccattttgaccgcttccgcttc
gacttgcagccggaggaatgctcttacgataaattcatgtttgcccagaaaaacttaccg
aaaaacttagaaatcacccacccagacaaaccgctgtgggacaagcagaacattctaaag
gcggattatatcctttatttacgggaggtatcaccctatatcctgccatttttaaaaaat
cgcttattaaccgtcattcgttatccacacggaatgtttggggaagcattctatcaaaaa
aactgtccggattatgcccctgattttgttgaaacgatgcttgcggatggaattaattat
attctttgtaataatctcaaaacacttatttggctcggtaaccagctggcaatagaattc
catgtaccgtttcatacgattgatagcaaaggcccaagtgaaattgtgtttgacctggac
cctccgtcgaaagaacatttccatttggctgttaaggcagccatattaattaaagaggtt
ctggaccagttgaatttaatcggatttatcaaaacatccggaaataaaggcctgcagatt
tacctgccactgccggagaatgaattcacttatgatgatacaaggttgttcacaagtttt
atcgcagaatacttaatatccaaagaccctgattcatttacgattgaacggatgaagaaa
aatcgcggcaacagactttacgtcgattatgtccagcacggtgaagggaagacgatcatt
gccccatattcgttaagaggtaatgaacatggcggagcggctacaccgttatattgggac
gaggtcgatgaaaagcttgatcctaaaacattcaccatgctacatgcgttacaacgcctt
aagcaattaggggaccctttccgcagctattttcaaacaaaagaaaaacagccctttgcc
ccagttcttgaaatattaaagaaaggtacagcaaaaaaaggataa
DBGET
integrated database retrieval system
