Natronomonas moolapensis: Nmlp_2867
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Entry
Nmlp_2867 CDS
T02478
Symbol
ligB
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nmo
Natronomonas moolapensis
Pathway
nmo03030
DNA replication
nmo03410
Base excision repair
nmo03420
Nucleotide excision repair
nmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nmlp_2867 (ligB)
03410 Base excision repair
Nmlp_2867 (ligB)
03420 Nucleotide excision repair
Nmlp_2867 (ligB)
03430 Mismatch repair
Nmlp_2867 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmo03032
]
Nmlp_2867 (ligB)
03400 DNA repair and recombination proteins [BR:
nmo03400
]
Nmlp_2867 (ligB)
Enzymes [BR:
nmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nmlp_2867 (ligB)
6.5.1.6 DNA ligase (ATP or NAD+)
Nmlp_2867 (ligB)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Nmlp_2867 (ligB)
DNA replication proteins [BR:
nmo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Nmlp_2867 (ligB)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Nmlp_2867 (ligB)
DNA repair and recombination proteins [BR:
nmo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Nmlp_2867 (ligB)
NER (nucleotide excision repair)
Other NER factors
Nmlp_2867 (ligB)
MMR (mismatch excision repair)
Other MMR factors
Nmlp_2867 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCQ37017
UniProt:
M1XRX6
LinkDB
All DBs
Position
1832162..1833820
Genome browser
AA seq
552 aa
AA seq
DB search
MEFAEFATRAAAVESVSADTDTVGFVAELFADAGEDLAVVTRFVRGRVFPAHEPTTLDIG
PALCYEALARAARPNVAAADVEAKLAEIGEIGAVAEELDLGGQRGLASFGDGDDGLTVAG
VDAELRALAGAEGVGSTDTKVETLFGLFNRAGPTEARFLARLVLGNMRIGVGEGAVRDAT
AAAFDVPSEAVERAMQVSNDAGLVAETARSEGEPGLGDVRLAVGRPVEAMLAQAGSAVDA
IEAWGSVAVEPKFDGARVQLHYDGVETRLFSRNLEEVTDALPEVVETVAAALDRPAILDG
EVVAVDEDGSPRPFQDVLRRFRRKHDVAAAREAVPVEFYAFDCLHADGDDLLDAPLLERR
ERLSALLGGDDADPGGVADVRIAESVEEIAAREEAALAAGHEGIMLKNPESAYTPGDRGR
NWLKRKPDVETLDLVVTGAEWGEGRRANHFGTFLLSIRDGEAFEPIGKVATGITDEELER
LHERLVSHVRSESGTDVEIDPAVVFEVGYEEIQRSPTYGSGYALRFPRFVAVREDKSPED
ADSLERVERLAR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgccgagttcgccacccgtgcggcggcggtcgagtcggtatcagcggacacc
gacaccgtcgggttcgtcgccgagctgttcgccgacgccggcgaggacctcgccgtcgtg
acgcggttcgtccggggacgggtgtttccggcccacgagccgacgaccctcgacatcggg
ccggcgctctgttatgaggcgctcgcgagggcagcacgcccgaacgtcgccgccgccgac
gtcgaagccaagttggccgagatcggcgagatcggcgcggtcgcagaggagttggatctg
ggcggccagcggggactggcgtcgttcggggacggcgacgacggcctcaccgtcgccggc
gtcgacgccgagctccgggcgctcgccggcgccgagggcgtcgggagcaccgacacgaag
gtcgaaacgctgttcgggctgttcaatcgcgccgggccgaccgaggcgcgatttctcgcc
cgcctcgtgttggggaatatgcggatcggcgtcggcgagggagcggtccgggacgcgacc
gcagccgccttcgatgtcccgtcggaggcggtcgagcgtgcgatgcaggtctccaacgac
gccggactcgtcgccgagacagcccgatccgagggcgaacccggactcggggacgtccgc
ctggccgtcggccggccggtcgaggcgatgttggcacaggccgggagcgccgtcgacgcg
atcgaggcgtgggggagcgtcgcggtcgaaccgaagttcgacggagcgcgggtgcaactc
cactacgacggcgtggagacgcggctgttctccagaaacctcgaggaggtaaccgacgcg
ctgcccgaggtcgtcgagaccgtcgctgcggcgctcgatcggccggcgatcctcgacggc
gaggtcgtcgccgtcgacgaggacggctccccgcggccgttccaggacgtgcttcgtcgg
ttccggcggaaacacgacgtcgcggccgccagggaggcggttccggtggagttctacgcc
ttcgactgtctgcacgcggacggcgacgacctcctcgatgcgccgctcctcgaacgacgt
gagcggctgtcggcgcttctggggggggacgacgccgaccccggcggcgtcgccgacgtc
cggatcgccgaatccgtcgaggagatcgcggcccgcgaggaggctgcgctcgcggccggc
cacgaggggatcatgctgaagaaccccgagtcggcgtacacgcccggcgacagggggcga
aactggctgaagcgaaagcccgacgtggagacgctcgatctggtcgtgacgggggccgag
tggggggaggggcggcgggcgaaccacttcgggacgttcctgctctcgatccgcgacggc
gaggcgttcgagcccatcggcaaggtggcgaccgggatcacagacgaggaactcgaacgc
ctccacgagcggctcgtctcccacgtccggtcggagtcgggcaccgacgtcgaaatcgat
cccgcggtcgtcttcgaggtcggctacgaggagatccagcgctcgccgacgtacgggtcc
gggtacgcgcttcggttcccgcggttcgtcgccgtccgcgaggacaaatccccggaggac
gccgacagcctcgaacgggtcgagcggctcgctcggtga
DBGET
integrated database retrieval system
