Nitrosospira multiformis: Nmul_A1177
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Entry
Nmul_A1177 CDS
T00302
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nmu
Nitrosospira multiformis
Pathway
nmu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nmul_A1177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmu03400
]
Nmul_A1177
Enzymes [BR:
nmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nmul_A1177
DNA repair and recombination proteins [BR:
nmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nmul_A1177
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABB74480
UniProt:
Q2Y9U1
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Position
1355243..1357804
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AA seq
853 aa
AA seq
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MTNDDSLKTYRAKRDFSVTPEPSGVASGKTAIKSTAKVLSFVVQKHWATRLHYDFRLELE
GTMKSWAVPKGPSFDPNDKRMAVHVEDHPISYNSFEGEIPSGQYGAGKVIIWDKGTWIPL
EDPHKGYRDGKLKFELRGLKLKGHWALVRMRKEENKKQEPWLLIKEKDEYVRSSREYSVV
DEMPDSVAELDVPDVPQPSKASATSGSSSPKSSSIFRKGTKTTLPDNARKAELPRTLTPE
LATLVDEPPVDPEEWIYEIKFDGYRMLSRIEGGEVRLITRNGNDWSHKLPHLIKALGKLK
LKSSWLDGEIAVLDENGIPDFQSLQNAFDSAHTESIIYYLFDVPFYEGYDLRDASLVERR
ALLQKLFEAHAPDEIRFSDVFDVSPAEILDSACRLGLEGVIGKRKTSVYVSRRSQDWIKL
KCKNRQEFVIGGYTDPKGTRKGIGSLLLGYYDEDRKLRYAGNVGAGFSDKTLEDLRARLD
RIALTDSPFVKANGLDKNAHWVEPRLIAEVSFGEWTRGGHIRHSVFHGLRSDKKADVIVR
EKPVHPAAKSAPASAIPKSLKVTNPDRVIDPSTGFTKVDLIRYYALVAPLMLPHLARRPV
SLVRAPEGVSGELFFQKHWEKENMPGIEQLDPSLDPDHPPLLEVSTAEGLLSAVQMNVIE
FHTWNATKNVIGKPDRIAFDLDPGSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGL
HIVVPIRRLRDWDTVKGFSQAIVQHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATT
VSAWSVRARPGLGVSVPLAWEELSSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVP
AMKKLGFTPSSKA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatgatgactcgcttaaaacttaccgggccaaacgtgatttctcggtaacacct
gagccaagcggcgttgccagtggcaagacagccatcaagagtactgccaaggttttgtcg
tttgttgtccagaagcactgggcaacgcgtctgcactacgacttcaggctggaactggaa
ggaacgatgaagagctgggctgttcccaaaggccccagtttcgaccctaacgacaaacgc
atggcggtccacgtcgaagaccatcccatttcctataacagttttgaaggcgagataccc
tcaggtcagtatggcgccggtaaagtcattatttgggataagggaacctggattcctctc
gaagatccgcacaaggggtatcgtgacggcaagctgaaattcgagctgcgggggctcaag
ctgaaagggcactgggccttggtgcgcatgagaaaggaagaaaacaaaaagcaggaaccc
tggctgctgataaaagaaaaggatgaatatgtccgttcatcgcgggagtatagcgtggtg
gacgaaatgccggacagtgtggccgaacttgacgtgccagacgtgccacaaccttccaaa
gcttccgcaacatcgggaagcagctcacccaaaagcagttcgatattccgcaagggaacg
aaaacgaccttgccggacaatgcgcgcaaggctgagcttccgcggacattgacgccggag
ctcgccacgctggtggacgagcctcctgtggatccggaagagtggatttacgaaatcaag
tttgacgggtaccggatgttgagcagaatagagggaggagaagtccgcctcataacccga
aacggaaatgactggtctcataagctgccgcatctgataaaagcgttgggaaagctcaaa
ctgaagtcgtcctggctcgatggcgaaattgcggtgctggatgaaaacggtattcccgat
ttccagtcgttgcagaatgccttcgacagcgcgcataccgagagcatcatttattatctc
ttcgatgtgcccttttacgagggatatgatttgcgggacgcttcccttgtcgaacgccgc
gccttactgcaaaaactgtttgaggcacacgcccctgatgaaatacgcttcagcgacgtt
ttcgatgtttctccagcggaaattctcgattccgcttgccggcttggactggaaggagtg
atcggcaaacgtaaaacctcggtttatgtctcgcgccgatcccaggactggataaagctc
aaatgtaaaaaccgccaggaattcgttatcggcggatatacagatcccaaaggtacgcgg
aagggtattggttctcttctgctcggttattatgatgaagaccgaaaactcagatatgca
gggaatgtaggcgcgggattcagcgataagacgctggaggacctcagggcaaggttggac
agaattgctttgacggatagcccttttgtgaaagcaaatggcctcgataaaaacgcgcat
tgggtcgaaccccggcttatcgcggaagtttccttcggtgaatggacgcgaggaggtcac
attcgtcactcggtattccacggtttgagatccgacaaaaaagcggatgtcattgttcgc
gagaagcccgtgcatcccgcggcgaagtcggcgcctgcaagcgccattccaaaatccctg
aaagtgacgaacccggaccgagtgatcgatccctccaccgggtttacaaaggtcgatctc
atacgctactacgcgctggtagcgcctttgatgctgcctcacctcgcacggcggccggtt
tcactcgtgcgtgctcccgagggggtatcgggcgaactcttttttcagaagcattgggag
aaagagaacatgccggggatcgagcagcttgatccatcgctcgaccccgaccatcctccg
ctgctcgaagtttcaaccgctgaaggccttctttccgcagtgcagatgaacgtgatcgag
tttcatacgtggaacgccaccaagaatgtcattggcaagcctgacagaatcgcgttcgac
ctggaccccggcagcggagtcgaatgggccctcatccaggagtcggcgcagctcgtcaat
gtctttctcagggaactggggttgaaatcttttctgaaaacgagtgggggcaaaggcctg
cacatcgtcgtgccgatcaggaggctgcgtgattgggatacggtgaaaggtttctctcag
gccatcgtacagcatctggctaaaaccattccgacgcgtttcaccgcaaaaagcgggcct
cgcaaccgggtgggaaagatcttcatcgattacctgcgcaatgggttcggagccaccacc
gtatccgcctggtcagtacgcgcccggcctggattgggcgtttctgtaccgctggcgtgg
gaagagctgtcctcgctgaaaagcagtactcgctggtccgcttccaatattcatgaacgc
ctggataagggtaatgacccctgggccgactacgcagagacgaatcaatcgatagttcct
gccatgaaaaagctgggattcaccccttcatcaaaggcatga
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