Nitrospira moscoviensis: NITMOv2_2657
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Entry
NITMOv2_2657 CDS
T04041
Symbol
ykoU
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nmv
Nitrospira moscoviensis
Pathway
nmv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NITMOv2_2657 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmv03400
]
NITMOv2_2657 (ykoU)
Enzymes [BR:
nmv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NITMOv2_2657 (ykoU)
DNA repair and recombination proteins [BR:
nmv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NITMOv2_2657 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
FAD-oxidase_C
Motif
Other DBs
NCBI-ProteinID:
ALA59070
UniProt:
A0A0K2GDN5
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All DBs
Position
complement(2500491..2503178)
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AA seq
895 aa
AA seq
DB search
MPRPATNDLDRYRRKRDFQRTPEPSGRLARQAVAAPAGRPLFVVQKHAASRLHYDFRLEL
DGTLKSWAVPKGPSLDPAQKRLAVHVEDHPLEYAEFEGVIPPKQYGAGTVLVWDRGTWEP
LSDPREGYRRGVLKFRLRGEKLHGGWTLVRMHRRGGEDEDNWLLIKERDADAKSGPAGEI
VETLPDSVASGRGIEQVKGARARVWQSNRSSALSRQPPPALSAPPSGRGTRHLPFATHHA
SRITLHPASVPGAVKRACPDWIAPQLASLVNGMPAGEGWLHEIKYDGYRIVSRVERGTAR
LYSRNRNDWTSRLRPQAEALAALGLDEAWLDGEVVVLDAGGKPDFQALQNAFDLEAPRPI
VYCLFDLMYLNGYDLRGAPLAERKRLLAALLPDGRDGATLRYSDHLVDRGREVFVEACRS
GLEGVIAKRADASYRSGRGSSWLKIKCERRQEFVIGGYTDPSGSRHGFGALLVGYYDGDE
LRYAGKVGTGFSETSLRELSARLTRLTQRRPPFVNPPSGSEARGVHYVRPQLVAEVRFAE
WTQEGILRQPSFQGLRQDKPARAIGREWPQEEQGDSNGGTRGSNGGKGGKGDNGGTRGNR
REQGTTVRLSHPDRVLYPDMGLTKEGLARYYEAVAEWIVPHLRGRPLTLVRCPEGYQDCF
YQKHINETVPKAIQRIEIEEDDGIGTYMIADSLEAVLGLVQMGVLELHTWGATRDRLEQP
DRLTFDLDPDPSVPWEQVIEAAQLTRTLLDELGLVSFVKTTGGKGLHLVTPIERTCAWDE
AKAFAKSVADHMARTIPQRFTANMAKRARKGKIFIDYLRNARGATAIAAYSTRAKPGAPV
SVPLAWDELSPELKSDSFTVTNVPGRLKSLRADPWEGYRDATRRITERMKRRLAP
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcccggcgacgaacgatctggatcggtatcggcgcaagcgggactttcagcgg
acgccggagccgagcggccgtcttgcccggcaagccgtcgctgcgccggccggccggccg
ctgttcgtcgtgcagaaacatgccgcctcgcggctgcactacgacttccggttggagctc
gacgggacgctgaaaagctgggccgtgcccaaagggccgagcctcgatccggcgcaaaag
cgcctggcggtgcatgtcgaggaccatccgctcgagtatgccgagttcgaaggcgtcatc
ccgccgaagcagtacggggccgggacggtgctcgtgtgggaccgcgggacctgggaaccg
ctgagcgacccgcgggagggctatcggaggggcgtgctgaagttccggctgcgcggcgaa
aaattgcacggcggctggacgctggtgcgcatgcaccgccggggcggcgaagacgaagac
aactggctgctcatcaaggagcgggatgcggacgcgaagtccggaccggcgggcgagatc
gtcgagacgctgccggacagcgtggccagcgggcgcggcatcgagcaggtgaagggcgcg
cgggcccgggtctggcagtcgaaccggtcttcagctctcagccgtcagccgccgccagcg
ctcagcgctccgccctccgggcggggcacccggcacttgccgttcgccacgcatcacgca
tcacgcatcacgcttcacccggcttctgtgcccggcgcggtgaagcgcgcctgtccggac
tggatcgcgccgcagttggcgagtctcgtgaacggcatgccggcgggcgaaggttggctg
cacgaaatcaagtatgacggctatcgcatcgtcagccgggtggagcggggaacggcccgg
ctctacagccgaaaccgcaacgattggacgagccgcctgcgtccgcaggccgaggcgctg
gcggcgctcggcctggacgaggcgtggctcgacggtgaggtcgtcgtgctggacgccggc
gggaagccggatttccaagccctgcaaaacgccttcgatctcgaggcgccccgtcccatc
gtctattgcctgttcgatctcatgtatctcaacgggtatgacctccgcggcgcgccgctg
gccgagcgcaagcgcctgctcgccgcgttgctccccgacggccgcgacggggccacgctg
cggtacagcgatcacctcgtcgatcggggacgggaggtgttcgtggaagcctgccgcagc
ggcctcgagggcgtgatcgccaaacgcgccgacgcctcctatcggtccgggcgcgggtcc
agttggctcaagatcaaatgcgagcggcggcaggaattcgtcatcggcggttataccgat
ccatcgggatcgcgccatggattcggcgcgttgctggtcggctattatgacggagacgaa
ctgcgctacgcgggcaaggtcggcacgggattctcggagacgtcgttgcgcgagctcagc
gcccggctgacccgtctgacacagcggcggccgccgttcgtcaatccgccctccggttcg
gaggcgcgcggcgtccattatgtacggccgcagctggtggccgaggtgcggtttgccgag
tggacgcaggaggggatcttgcgccagccgagtttccaaggcctgcggcaagacaagccg
gcgcgcgccatcgggcgggaatggccgcaggaggagcaaggggatagtaatgggggtacg
cggggtagtaatgggggtaaagggggtaagggggataacgggggtacgcggggtaatcga
agggagcaggggacgactgtgaggctgagccatcccgatcgggtgctgtatccggatatg
gggctcaccaaggaaggactggcccgctattacgaagccgtcgccgagtggatcgtgccg
cacttgcgcggacggccgctgacgttggtccggtgtccggagggctatcaggactgtttc
taccagaagcacatcaacgagaccgtgccgaaagccatccagcgcatcgagatcgaggag
gatgacggaatcggcacctacatgatcgcggattcgctggaggccgtgctcggcttggtc
cagatgggtgtcttggagctgcacacctggggagccacgcgcgatcggttggaacagccc
gatcggctcacgttcgatttggaccccgatccatccgtcccctgggagcaggtgatcgaa
gcggcgcagctcacgaggacgctgctggacgaattgggactggtgagttttgtaaagacg
accggcgggaagggcctgcatctcgtgacgccgatcgaacggacgtgtgcgtgggacgag
gcgaaggcctttgcgaagtccgtcgccgaccacatggcgcggacaatcccgcagcgtttc
acggcgaacatggcgaaacgcgcgcggaagggcaaaatcttcatcgactatttgcgcaac
gcgcgcggcgccacggcgatcgccgcctattcgacgagggcgaagccgggcgcgccggtg
tccgtgccgctggcctgggacgaactgtcgccggaactcaagtccgactccttcacggtt
accaacgtgccgggtcgtctgaagagcctgcgggcggatccctgggaagggtaccgagac
gcgacgcgccggatcaccgagcggatgaagcgacggctggcgccataa
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