Nipponia nippon (crested ibis): 104017341
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Entry
104017341 CDS
T05756
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104017341 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nni03400
]
104017341 (LIG4)
Enzymes [BR:
nni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104017341 (LIG4)
DNA repair and recombination proteins [BR:
nni03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104017341 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
104017341
NCBI-ProteinID:
XP_009468640
UniProt:
A0A091UKW0
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPPSRKTVASHVPFADLCSTLERIQRCKSRPEKTKYFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNNQKLGHEVLSKRYEILSSVFTPVTGRIHVVRKKNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKV
SNIFEDVEFCVMTGMGKYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRIKDDEVVPLDVIAELEERYSWNTCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGISHVVIGEDHSRVKEIKTLRRTFGKKFKILSELWVTESVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcttcgcagccgccttctagaaaaacagtggcctctcatgtccct
tttgcagatctgtgttctactctggagcgaatacagaggtgtaaatctcgtccagagaaa
accaagtatttcaaggatttcctggattcctggagaagattccacgatgctcttcatcaa
aaagagaaggatgtcacagattctttttatccagctatgcggcttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttgaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaaccg
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacctagatgctata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcattcggatgattataaaggatctaaag
cttggtgttagtcagcaaactatattttccatttttcatcctgatgctgttgaattacac
aacgtcacaactgatttggaaaaagtttgcagacaactgcatgatcccactgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtctataaatatttttcccgaaatggg
tttgactatacacagcagttcggtgcttccccccttgatggttcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcccgaggcgcaaacctttatgcaaaaaggaaacaaatttgacattaaaagaatggtg
gaggactctgacctgcagacatgcttctgtgtgtttgatgtgttgatggtcaacaatcag
aagttgggtcatgaagtactaagcaaaagatacgaaatcttaagtagcgtatttacccca
gtaacgggcaggatacatgttgtacgtaaaaaaaatgccagaacgagaaaagaagtaatc
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
aatgggctgatggatgaactggaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaa
aaacctacagttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgacttaggcttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagccgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattccctcgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgaactggaaagcagaatagctgaatgtggtggcagcgtggtgcagaacccagggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctccagacacaaaagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaataaaagacgatgaggtggtgcctttggacgtgattgcagagtta
gaagaacgttattcatggaacacttgtcagctcagtatattcagaggaaacactatttat
gtggactgttacgctgttgttaatgagcccagaacgaaaatccatggaacaacactatca
attagagctttggagctccgcttttatggtgcaaaagtagtctctcaccttgaagagggc
atctcccatgttgttataggagaagatcattcccgggtaaaagagattaaaacactcagg
agaacatttgggaaaaaatttaaaattttatctgagctgtgggtaacagagtcagtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa
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