Nocardia nova: NONO_c66260
Help
Entry
NONO_c66260 CDS
T03032
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nno
Nocardia nova
Pathway
nno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NONO_c66260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nno03400
]
NONO_c66260 (mfd)
Enzymes [BR:
nno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NONO_c66260 (mfd)
DNA repair and recombination proteins [BR:
nno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NONO_c66260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
DUF3638
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AHH21395
UniProt:
W5TPX1
LinkDB
All DBs
Position
complement(7129126..7132740)
Genome browser
AA seq
1204 aa
AA seq
DB search
MPTRRPPLAGLAGVAGTDAAMAQVRELIGRASVQLVAPSAIRPFVAATVAEARPLVVVTA
TGREADDLTVELGEIIGDGVALFPSWETLPHERLSPSADTVGRRLQVLRRLAHPEDPGQA
GPLRVVVTTVRSLMQPMAGGLGEIEPVVLRVGAEFDFDELVTRLVEFAYERVDMVGKRGE
FAVRGGILDLFPPTADHPVRVEFWGDEVSELRAFSVADQRSLTEVEVDLVVAQPCRELLL
TEDLRETAAKVAADNPADAALVEMLEKLGQGIPVEGMEALLPVLRPGELQLLTDVVPAET
QVLLCDPEKIRTRAADLVRTGQEFLEASWTAASFGGAAPLGAHGLDLASSAYRGLDIVRA
DAEERGLSWWTLSPLAADDPAEIVLPVLSTPAARGSEELVATVFASLRAHVGTGGRAVIV
VAGHGTAQRIQERLADADVPAAALDPGAEPVPGVVGVLCGSLHDGIVFDDAKLVVVAESD
LTGNRVTAPGEGKKLPARRRNQVDPLALTAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLFVPMDSLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIA
TELVQLYAARQAAPGHAFAPDTPWQQEMEDAFAFTETHDQLTAIAEVKTDMERAVPMDRV
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERVAGFPVTVKGLSR
FTDPAESRAVIDGMAVGDVDIVVGTHRLLQTGLRWKELGLVIIDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGGYNDKQVAAAVRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDVLEKTVQGFWEREFDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPAEKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITTEEETKEVRIDLPVDAHIPPDYIASERLRLEAYRKLAAAQDDSAVGAVL
DELVDRYGPLPVEVGRLVSVAKLRLLCREYGIQEVGVTGTTLKLSPMQLPDSKQMRLKRL
YPSASYRPTTGIVQLPLPRVEDSVGASRVRDVQLLQFVADLLLAMDGKPKGMVDLHVPTE
VSVG
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcctacccgtcgtccacctcttgcgggactggccggggtggccggtaccgatgccgcg
atggcccaggtcagggagctgatcgggcgggcttcggtgcaactggtcgcgccctcggcg
attcggccgttcgtggcggcgacggtggcggaggcgcggccgctggtcgtggtgaccgcg
accgggcgggaggccgatgatctgaccgtcgaactcggcgagatcatcggtgacggggtg
gcgctgttcccctcctgggagacgctgccgcacgaacggctctcacccagcgccgacacc
gtgggccgtcgattgcaggtgctgcggcggctggcgcacccggaggatcccggtcaggcg
gggccgttgcgggtggtggtgaccaccgtgcggtcgctgatgcagccgatggccggtggt
ctcggtgagatcgagccggtcgtgctgcgggtgggcgccgaattcgatttcgacgaattg
gtcacgcggctggtcgaattcgcgtacgagcgcgtcgacatggtcggcaaacgcggtgaa
ttcgccgtccgcggcggcatcctcgacctcttcccgcccaccgcggatcatccggtgcgc
gtggagttctggggtgacgaggtcagcgagctgcgcgcgttctcggtcgctgatcagcgg
tcgctcaccgaggtcgaggtggatctcgttgtggcgcaaccctgccgggaactgctgctg
accgaggatctgcgcgagaccgcggccaaggtcgccgccgacaatccggcggatgcggcg
ttggtcgagatgctggagaagctgggccagggcattcccgtcgagggaatggaagcgctg
ctgccggtgctgcgtcccggcgaactgcagctgctcaccgatgtcgttccggccgaaacc
caagtgctgctgtgtgatccggagaagatccgcacccgcgccgccgatctcgtacgcacc
ggtcaggagttcctggaggcgtcgtggacggcggcctccttcggcggcgccgcgccgctg
ggcgcacacgggctggatctggcctcctcggcttatcgcgggctcgacatcgtgcgcgcc
gacgcggaggagcggggcctgtcgtggtggacgctgagcccgctcgccgccgacgatccg
gccgagatcgtgctgcccgtcctgtccacgcccgccgcgcgcggctccgaggaattggtc
gcgacggtcttcgcgtccctgcgcgcgcacgtcggcaccggcggtcgggcggtgatcgtg
gtcgcgggacacggtacggcacaacgcattcaggaacgcctcgccgatgccgacgttccg
gccgcggcattggacccgggcgccgaaccggtgcccggggtggtgggcgtgctgtgcggt
tcgctgcacgacggcatcgtgttcgacgacgcgaaactggtcgtggtcgccgaatccgat
ctcaccggtaatcgggtcaccgcaccgggcgaggggaagaaactgcccgcgcgccggcgc
aatcaggtcgatccgctggcactgaccgcgggcgatatggtcgtgcacgatcagcacggc
atcggccggttcgtggagatgatcgaacgtacggtgggcggtgcgcgccgggagtatctg
gtcatcgagtacgcgccgagtaagcgcggccagcccggcgaccggctgttcgtgccgatg
gactcgttggatcagctctcccgctatgtgggtggcgagatgccgagcctgtccaaactc
ggcggctcggactgggcgaatacgaaacgcaaggcgcgcaaggcggttcgcgagatcgcg
accgaactcgtgcagttgtatgccgcgcgccaggccgcaccgggccatgccttcgccccg
gacaccccgtggcagcaggagatggaggacgccttcgcgttcaccgagacccacgatcag
ctcaccgccatcgccgaggtgaagaccgatatggagcgcgcggtcccgatggaccgggtg
atctgcggcgatgtcggctacggcaagaccgagatcgcggtgcgcgccgccttcaaggcc
gtgcaggacggtaagcaggtcgcggtgctggtgccgacgacgctactggcacaacaacat
ctgcagaccttcaccgagcgggtggcgggcttcccggtgacggtgaaggggctctcgcgc
ttcaccgatccggccgaatcgcgcgcggtgatcgacgggatggccgtcggtgacgtcgat
atcgtggtcggcacccaccggctgttgcaaaccggactgcggtggaaggaactcggactg
gtcatcatcgacgaggaacagcggttcggtgtcgagcacaaggaacacatcaaggcgctg
cgcacccacgtcgacgtgctgaccatgtccgcgacgccgatcccgcgcaccctggagatg
agcctggccggtatccgcgagatgtcgaccatcctcaccccgcccgaggaacgccacccc
gtcctcacctacgtcggcggttacaacgacaagcaggtcgccgccgcggtccgccgcgaa
ctgctgcgcgacggccaggtgttctatgtgcacaaccgggtgtcctcgatcgacaaggcg
gccaagcgaattcgcgatctggtcccggaggcgcgggtcgcggtggcgcacggtcagatg
aacgaggatgtgctcgagaagaccgtgcagggcttctgggagcgcgaattcgacgtcctg
gtctgcaccacgatcatcgaaaccggtctggacatctccaatgccaacaccctgatcgtg
gagcgcgcggacgccctggggctgtcccagctgcatcagctgcgcgggcgtgtcgggcgc
agccgggaacgcggttacgcctacttcctgtatccggccgagaagccgctcaccgaaacc
gcctacgaccggctggccaccatttcgcagaactccgatctgggcgcgggtatggccgtc
gccatgaaggacctcgaaatccgcggcgccggaaacgttctcggcgcggagcagtccggt
cacgtggcgggcgtcggcttcgatctgtatgtgcggctggtcggtgaggcggtggaggcg
tatcgcgccgctgccgacgggcggccgatcacgaccgaggaagagaccaaggaggtgcgg
atcgacctcccggtggatgcgcacatcccgcccgactacatcgccagtgagcggctgcgg
ctcgaggcgtatcggaaactcgctgccgcccaggatgattcggccgtcggcgcggtgctg
gacgaactcgtcgaccggtacggcccgctgccggtggaggtcgggcggctggtgtcggtc
gcgaagctgcggctgctgtgccgggagtacggcatccaggaggtcggtgtcaccgggacc
acgctgaagctgtcgccgatgcagttgcccgattcgaaacagatgcggctcaagcgtttg
tatcccagtgcgagctaccggccgaccaccggcatcgtgcagttgccgctgccgcgggtc
gaggacagtgtgggcgcgtcccgggtgcgcgatgtgcagctgctgcagttcgtggccgat
ctgctgctcgcgatggacggtaagccgaagggcatggtcgatctgcacgtgccgaccgag
gtctcggtcgggtga
DBGET
integrated database retrieval system
