Nelumbo nucifera (sacred lotus): 104609073
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Entry
104609073 CDS
T04131
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104609073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nnu03400
]
104609073
Enzymes [BR:
nnu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104609073
DNA repair and recombination proteins [BR:
nnu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104609073
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104609073
NCBI-ProteinID:
XP_010273583
UniProt:
A0A1U8BAU6
LinkDB
All DBs
Position
Un
AA seq
1168 aa
AA seq
DB search
MTDQTVKFSVLCSLFNWMQRSKSSAKKRSKFRKFLDNFCKPGDYFSAIRLILPSLDRERG
SYGLKESVLATCLIDALGMSKESEDALRLINWRKGGAKTGANAGNFALVAAEVLQQRQGM
ASGGLTIKELNDLLDHLASSGNREEKTSVLSELIKKTNAQEMKWIVMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRAQLAMRVSDATTAW
KRLHGKDVVVECKFDGDRIQIHKNGAEIHFFSRNFFDHLEYGHGMSNIIVQNILIDRCIL
DGEMLVWDTSTNRFAEFGSNQEIAKAAKEGLDSDQQLCYVAFDILYAGDTSVIHQSLKER
HEILRKAVKPLKGRLEILVPNGGLNAHRPSGEPCWSLIANNVADVERFFKETVENRDEGI
VLKDLGSKWEPGDRSGKWLKLKPEYVHASSDLDVLIIGGYYGSGRRGGDVAQFLLGLAER
SAPNVYPRRFISFCRVGSGLSDDELNALLTKLKPYFRKNEYPKKSPPSFYEVTNNSKERP
DVWIDSPEKSVILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVDLV
QSSNGNTQRGTDYGCLQDSKPKHTKSSQLGERKKNVSIVPSHFVQTDTSGVKEETLIFAN
IMFYFVNVPPTHSLDSFHKMVAENGGTFSMNLNGSVTHCIAAEQKGIKYQAAKLHGDIIH
YSWVLDCCSQKRLLQLHPKYYLYLSESSKSKLQEEIDKFSDSYYLDLDITDIKQLFSNLV
GTEDSKSIDHYKKYRPNEKWSWFQGCCIYFIPLIGSINMNWKVLFEISLRRMSLEVSMHG
GKVSCDIFHATHLVVLSAPGSNVDFGTLLESFSAADKHFLYNKKLHILGYQWLEDSLEMG
QKLQEGKYGLRPDSLEDLPIEQRISDIEENQNGHPEKDDKGSTNGPAVEHLRVSESPEKG
AKRKRGRPALTKAKGARKGFSQTRRSRARLGNRPAKIDENESGSNDSCDETKKHEHFVTS
EGSKGTDGMDAMKNGTSQENESPEVLDRSLGINPTKWEATEDENPEWFPKDQRTELDGGI
YTRDSENAQGSGNAYKEKKDNLEKLEMMVDPVQAMLLDMIPSLGVNKIETADSVIEIKKP
LEDPDAEPVKKKKKVSYKDVAGELLKDW
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaaacggtgaagttcagtgttttgtgcagtttattcaattggatgcagcga
agcaagtcttcggcgaagaagcggtctaaatttcgtaaatttctcgataacttctgcaag
cctggagattacttcagtgcaattcggctgattcttccctctcttgatcgagaaaggggt
tcctatgggttgaaggagtctgtgctcgcaacttgccttattgacgcccttggaatgtca
aaggagtctgaagatgctcttcgcctcatcaattggcggaagggtggagccaagacgggc
gccaatgctgggaattttgctcttgttgctgcagaggtattacagcaaaggcaggggatg
gcttctggtggattaacaatcaaggagttgaatgacttgcttgaccatttggcttcaagt
gggaacagggaagaaaagacttctgttctttctgagcttatcaagaaaacaaatgcacag
gaaatgaagtggattgtcatgataattcttaaagatctgaagctgggtattagtgagaaa
agcattttccatgaatttcatccagatgccgaagacttgtttaatgtaacatgtgactta
aaattagtttgtgagaagctgagagatcgaagccaacggcacaaacgacaggatatagaa
gttggaaaagcagtgcgtgctcaattagccatgagagtcagtgatgctactactgcatgg
aagaggcttcatggaaaagatgtggttgttgaatgcaaatttgatggagaccgcattcaa
attcataaaaatggagcagaaatacacttcttttcaaggaacttctttgatcaccttgaa
tatggacatggaatgtcaaacattattgtacaaaatatccttattgatagatgtatactt
gatggtgaaatgttggtctgggacacatctacaaatcgttttgctgagtttggttcgaat
caagaaatagcaaaggcagcaaaggagggattagatagtgatcagcagttgtgctatgtt
gcatttgatatcctttatgctggagacacaagtgttatccatcagagtttgaaggaacga
catgaaattcttagaaaagctgtaaagcctttgaaaggtcgtttggaaattttagtgcca
aatggtggtcttaatgctcatcgtccttcaggggaaccatgctggtctcttattgcaaat
aatgtggcagacgttgaaagattttttaaggaaactgttgaaaatagagacgaagggatt
gttttgaaagaccttggttctaaatgggaacctggggatcgaagtggaaagtggttaaag
ctgaagcctgagtatgtacatgctagttctgatctggatgtcctgatcataggaggatat
tatggctctggacgtcgtggaggcgatgtggctcagtttttgttgggtcttgcagagcgt
tctgcaccaaatgtctatccgagacgatttatttcgttttgtagagtgggttccggtctc
tctgatgatgagctgaatgctcttcttacaaaattgaagccttatttcaggaaaaatgaa
tatccaaagaagtctccaccaagcttttatgaagttacaaataattcaaaggagaggcca
gatgtttggattgatagccctgaaaagtcagtaatactttcaatcactagtgatatccga
acaattaggtcagaggtatttgccgcaccgtatagtttgagattcccccgtattgaccgg
gtgagatatgacaaaccttggcacgaatgccttgatgtgcaatcttttgtggacttggta
cagtctagtaatggcaacacccagaggggaacagattatggatgcttacaagatagtaaa
ccaaaacacacaaaatcctcacaattgggtgagaggaaaaagaatgtttctattgtccct
tcacattttgttcagacagatacatctggtgttaaagaggagactcttatatttgcaaac
atcatgttttactttgtcaatgtgcctccaacccattctctggattccttccacaaaatg
gtggctgagaatggaggaactttctcaatgaatcttaatggctcagtcactcactgtatt
gcagccgagcaaaaagggatcaaatatcaggcagctaagcttcatggagatatcattcat
tattcttgggttttggattgttgctcacagaagcgactcctgcagttgcatccaaagtat
tatctctacttgtcagaatcatcaaagagcaaacttcaagaagaaattgataaattctct
gactcttattacttggatcttgatattacagacatcaaacagctttttagcaacttggtg
ggaacagaagactccaaaagtattgaccattataagaagtaccgtccaaatgaaaaatgg
tcatggtttcagggatgctgcatttatttcattcctttgatagggtccataaatatgaat
tggaaagttctatttgagatttcgctgaggaggatgagtcttgaagtttctatgcatggg
ggtaaagtcagttgtgacatttttcatgctactcacttggtggtcttgtcagcaccagga
tctaatgtggactttggcactttacttgaaagtttctcagcagcagacaaacattttcta
tacaacaaaaagctgcatattttagggtatcagtggttagaggattccttggaaatgggc
caaaagttgcaagaggggaaatatggtctgaggcctgatagcttggaggatttacctatt
gaacaaaggataagtgacatagaggaaaaccagaatggacatcccgagaaggatgacaaa
ggaagtactaatggacctgctgtagaacacctgagagtctcagaatcccctgagaagggt
gccaaaaggaagagaggcagacctgctttgaccaaagcaaaaggagcaagaaaaggtttc
agtcaaactcgaagatcacgagcaagacttggaaacagacctgcaaaaatagatgagaat
gaatccggcagcaatgattcctgtgatgaaaccaaaaaacatgaacactttgtaacaagt
gaagggtccaagggaactgatggaatggacgcaatgaaaaatgggacatcccaggagaat
gaaagcccagaagtcttggatagatcactaggaatcaaccctaccaaatgggaggccact
gaagatgaaaacccagagtggtttcctaaggaccaaagaactgaattggatggtggaatt
tacaccagagactctgaaaatgctcaaggatctgggaatgcttacaaagaaaagaaagat
aacttggaaaagctggaaatgatggtagatccggttcaagccatgttactagatatgata
ccaagcttgggggtgaataaaattgaaactgcagattctgttattgaaattaagaaacca
ttggaagatcctgatgcagagccagtaaagaagaaaaagaaagtcagctacaaggatgtt
gctggtgagttgctgaaggattggtaa
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integrated database retrieval system
