Neobacillus novalis: QNH39_16640
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Entry
QNH39_16640 CDS
T09082
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nnv
Neobacillus novalis
Pathway
nnv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNH39_16640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nnv03400
]
QNH39_16640
Enzymes [BR:
nnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNH39_16640
DNA repair and recombination proteins [BR:
nnv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNH39_16640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WHY89062
UniProt:
A0AA95MRT0
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Position
3344049..3345887
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AA seq
612 aa
AA seq
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MKPMLPSLTFDLPVRPGWLYEVKYDGFRALLEWTVDGITLTSRNGKPLLPQFPEIEKFLR
NYEEQFNAFLPLQLDGELVALENPYKANFSAIQIRGRLKAVKKISEQAEKSPCRIMAFDL
LMFKGKPLLNQPFLKRKDQLINLFQQLDLDLNSNPYNRQLLQLVYPCEDFNDLWEKVVLY
DGEGIIAKSRNSLWEEGKRTLQWLKYKNWKYVSCFVTSFDKTNGYFYVSVYKEKNIHVVG
QVLFGFKPEEKQALQQTIKQNIIREEGPLIYVNPAICLEVKYLELYDNQLREPHFDHFRF
DLEPAECTYEQFMIQQKNLPADLAITHPNKPLWENHHIQKIDYIYYLREVSPFMLPFLEN
RLLTVIRYPHGMFGEAFYQKNCPDYAPEFIRTQSADGIDYILCNDLKTLVWLGNQLAIEF
HVPFQTIHSKGPSEIVFDLDPPSKDAFHLAVKAALLIKEVLDHLNLIGFIKTSGNKGLQV
YLPLPEGKFSYDDTRLFTSFMAEYLIAQDPDSFTIERMKKNRGNRLYVDYVQHGEGKTIV
APYSMRGNEAAGVATPLYWEEVDEKLSPITFNMENALKRLQKHGDPFRDYFQTKQIQPFA
PVLEVLKKGKKG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctcccaagtcttacctttgatcttcccgttcggcctggttggctgtac
gaggttaaatacgatggatttcgagcactattagagtggaccgttgacggaataacgtta
acaagcaggaacggaaagccgctgctccctcaatttcctgaaatcgaaaaatttttgcgt
aattatgaggagcaatttaacgcttttttaccacttcagcttgacggtgaacttgttgcc
ttggaaaacccttataaagccaatttctccgccatccagatccggggtcgtttaaaggca
gtaaaaaaaatttccgagcaggcagagaagtctccttgccggatcatggcctttgatttg
ttgatgttcaaaggtaaaccactgctaaatcagcccttccttaaacgaaaagatcagtta
attaacttatttcaacaacttgacctagatttaaattctaatccctataatcgccaacta
cttcaacttgtttatccctgcgaggattttaatgacctatgggaaaaagtggtgttatac
gatggcgaaggaattattgctaaatctagaaatagcctttgggaggaagggaaacgcact
ttacaatggttgaaatataaaaattggaaatatgtaagctgttttgtcacttcatttgat
aaaacaaacggctatttttatgttagcgtgtataaggaaaaaaacattcatgtggttggt
caggttctattcggatttaaaccggaagaaaaacaagcattacagcaaacgataaaacaa
aatatcattcgtgaagaggggccattaatttatgtaaatccggccatctgccttgaagtg
aaatatttagagctctacgataatcaacttcgagagccgcatttcgaccatttccgcttc
gatttggaaccagccgaatgtacatatgaacaatttatgattcaacaaaaaaatttaccg
gctgatttagctatcacccatcctaataaaccgctttgggagaatcatcatatccaaaag
attgattatatttattatttacgggaagtttctccctttatgctgccgtttttagaaaat
cgcctgctgactgtgattcgttatccgcacgggatgttcggggaggctttttatcaaaaa
aactgtccggattatgcaccggaatttattcgaactcaatctgctgacggaattgattat
attttatgcaatgatttgaaaaccctcgtttggctgggaaatcaattagcgattgaattc
cacgttccctttcaaaccatccacagcaaggggccaagtgaaattgtctttgatttagac
ccgccttcaaaggatgccttccatttggctgttaaggcggcattattgataaaagaagtg
cttgaccaccttaatttgattggctttattaagacctcgggcaataagggcctgcaagtt
tatctgccattaccggaaggaaaattctcttacgacgatacaagactgtttacaagcttt
atggctgaatatttaattgcacaagaccctgattcctttacgatcgagagaatgaaaaaa
aatcgcgggaacagactttatgttgattatgtccagcatggggaagggaaaacgattgtt
gccccctattcaatgcgcgggaatgaagctgcgggagttgctacaccactctattgggag
gaagtagatgaaaaacttagtcctatcacctttaatatggaaaacgcattaaagcggctg
caaaaacatggagatccgtttcgggactatttccaaacaaaacaaattcagccctttgca
ccagtcctagaggtcctgaagaagggaaaaaaaggataa
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