Nonlabens sp. MB-3u-79: CW736_02810
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Entry
CW736_02810 CDS
T05253
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nob
Nonlabens sp. MB-3u-79
Pathway
nob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CW736_02810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nob03400
]
CW736_02810 (mfd)
Enzymes [BR:
nob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CW736_02810 (mfd)
DNA repair and recombination proteins [BR:
nob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CW736_02810 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
JIP_LZII
Motif
Other DBs
NCBI-ProteinID:
AUC78393
UniProt:
A0A2K8X665
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All DBs
Position
complement(622075..625419)
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AA seq
1114 aa
AA seq
DB search
MSFTTIQNQFSQAAPTQSLREIVAQSQGLSTISGLNGSSISIVLKSVFKDADKPFMLICN
DKEEAAFYLNDLEKMVGEQNVLFYPGSYRRPYQIEETDNANMLLRAEVLNRINSRKKPAV
IVTYPDALFEKVVTRKELEKNTLKIAVGDQISIEFANEVLFEYQFKRVDFVTEPGEFSLR
GGILDVFSFSNDEPYRIEFFGNEIDSIRVFDVETQLSKEQTKKISIIPNVENKHSEETRE
SFLKYISNNTVIFTMNMDLLYGRIDSLFAKAEQVYNELQGEVRQLTPHEIFSDSKLIKTQ
LKEYNHIEFTTVRGVVVYNTSPQPSFNKQFDLLIENLKENEADGYKNFLFCSSEQQAQRF
HDIFDDMKAEVQYETVVMPLYRGFVSHDLRVVCYTDHQIFDRYHKFHLKNGYAKKQAITL
KELNILVTGDYVTHIDHGIGRFAGLQKIDVNGKKQEAIKLIYGERDILYVSIHSLHKITR
YSSKDGKPPKVYKLGSPAWKKLKAKTKTRVKQIAFDLIKLYAKRRAQKGFQYAPDGYLQN
ELEASFIYEDTPDQIIVTDDVKKDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAAVNGKQ
VAVLVPTTILAFQHAKTFNERLADLPVKVDYLNRFRTAKERKGVLEGLENGSIDIVIGTH
QLVSKSVVFKDLGLLIIDEEQKFGVAVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTPPPNRHPIETKVVRFSEETIRDAISYEISRGGQVFFVHNRIENIKEVAGMIQR
SVPDAKIGIGHGQMEGKKLENLMLAFINGEFDVLVSTTIIESGLDVPNANTIFINHANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTEDARKRIQALEMFSDLGSGFNIAMKDLE
IRGSGDILGGEQSGFINEIGFDTYQKILSEAITELKENEFADLYETNDKEKKHVTDVNVD
SDFELLFPDDYINSITERLALYSKLNEVQDEKALDTYKNELIDRFGELPEEAENLLTSVR
IKWVATRLGLEKIVMKQGKFIGYFISDQQSGFYQSESFSRVLKAVQTNPKVLRMKEKQTR
SGLRLLLTVENVRTVDRVYDILNAIMPVNAPSIE
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagttttactactattcaaaaccaattttcacaagcagcaccaacgcaaagcttgaga
gaaatcgtggcccagtcccaaggattgtcaacgataagcgggctcaacgggagttctatt
tccattgttcttaaatctgttttcaaagatgctgacaagccttttatgttgatttgcaac
gacaaggaagaagctgcattttatttgaacgacctggaaaagatggttggggagcaaaac
gtactcttctaccctggtagttaccgacgtccgtatcaaatagaagaaacggacaatgca
aacatgctcttgcgtgctgaggtgcttaaccgtatcaactcgcgtaaaaagccagccgtt
attgttacttatccagatgcgctttttgaaaaagtagtcacccgtaaggagttggaaaag
aacacgctcaaaattgcagtaggggatcaaatatctattgagtttgctaatgaagttttg
tttgagtatcaattcaaacgagttgattttgtaacagaacctggagagttctccctacga
ggaggaattctagatgtattttctttttccaatgacgagccttatcgtatagaatttttt
ggaaatgagattgattccatacgcgtatttgatgtggaaacccaactctcgaaagagcaa
acaaaaaaaatctccatcattcctaatgtagaaaacaagcattctgaggaaactcgggag
agctttttaaaatacatttctaataatacggtcatcttcacgatgaatatggatctgtta
tatggtcgtattgattcgcttttcgcgaaagcggaacaagtatataacgagttgcaaggt
gaagtaaggcagttgacacctcacgaaattttcagcgatagcaagttgatcaaaacacag
cttaaagaatacaatcatatagaatttactaccgtacgtggggtagtggtttataatacc
tcaccgcagcctagttttaacaagcagtttgatttactgattgaaaatttaaaggaaaac
gaggcagacggatataaaaactttcttttttgtagtagtgagcagcaagcccaacgtttt
catgacatctttgacgatatgaaagctgaggtgcaatatgaaacagtcgtgatgcctctg
tatcgcggttttgtaagtcatgatttgcgagtggtttgttataccgatcaccaaatattt
gatcgctaccataagtttcatttaaagaacggctatgccaaaaagcaggcgatcacctta
aaggaactcaacatattagtcactggagattatgtaacacatattgaccacggaattggg
agatttgcgggattacaaaagatcgatgtgaacggaaaaaagcaagaagcgatcaagctg
atttatggggagcgtgatatcttatatgtttctatacattctttacacaaaatcaccaga
tacagcagtaaggatggtaagccgcctaaggtctataaattaggaagtccggcatggaaa
aaattaaaggccaagaccaagactagagtgaagcaaattgcttttgacttgattaaattg
tatgccaaacgccgtgcgcaaaaaggattccaatacgcgccagatgggtatttacaaaat
gagctggaagctagttttatctatgaagacactccagatcaaataattgtaacggatgat
gtaaagaaagatatggagagcgatcgtcctatggatcgactcgtttgtggtgatgtaggt
tttggaaaaacagaagtggctataagagcggcttttaaggcggccgttaatggtaagcaa
gtggccgtgctagttccaactactatccttgcatttcaacacgcaaaaacatttaatgaa
cgacttgcagacctacctgtaaaagtggattatttaaatcgatttagaaccgctaaagaa
cgtaaaggagtcttggaaggattagaaaacggctctattgacattgttatcggtacgcat
caattggtgagtaaatctgttgtttttaaagacctagggttgctcattattgatgaagaa
cagaagtttggtgttgcagtgaaagacaaactcaaaacacttaaagaaaatatagatacg
cttacattgactgcaactcccatacctagaactttacagttttctttaatggctgcacgg
gatttaagtgtgatcaaaacaccaccacctaaccgacatcccatagagactaaagtggta
cgctttagtgaagaaaccatacgcgatgcaatcagctatgagatttctcgtggcggacaa
gtgttctttgtacacaaccgtattgagaacatcaaagaagtcgctggaatgattcagcga
tctgttccagatgcaaaaataggtataggtcacggacagatggaaggaaagaaactagaa
aacttgatgcttgcttttatcaatggggagtttgatgtgctggtttctactacgattatt
gaaagtggtttagatgttcctaacgccaacacgattttcattaaccatgctaataatttt
ggactttcagacttgcaccagatgcgcggtcgtgttgggcgcagcaacaagaaagctttt
tgttactttattacaccaccttatgaggtgatgacagaagatgctagaaaacgtatccaa
gcattagaaatgttctcagacctgggtagcggttttaatattgctatgaaggatcttgaa
ataagaggctcaggagatattttaggcggcgagcaaagtggattcatcaacgaaataggt
tttgatacctatcaaaaaatattaagtgaagccatcacagaattaaaagaaaacgagttt
gctgacctttatgagaccaatgataaagagaagaagcacgtcactgatgtcaatgtagac
tctgattttgaattgcttttcccagatgattatatcaactccattacagagcgtcttgcg
ttgtattctaagcttaacgaggtacaagacgaaaaagctttagacacctataagaatgag
cttatagaccggtttggagagcttcctgaagaagcagagaatttactgactagtgtaaga
attaaatgggtggctacccgattaggattagaaaagattgtgatgaaacaaggcaagttt
ataggatactttatctctgatcaacaaagtggtttctatcaaagtgaatctttctctaga
gtattaaaagcggtacagaccaatcctaaggttttaaggatgaaagaaaaacaaacgcgt
tcaggattgcgattgctgcttacggtagaaaatgtacgaacggtagatagggtctatgat
attttgaatgcgatcatgcctgtgaatgcaccaagcattgagtaa
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