Novosphingobium sp. Gsoil 351: GKE62_16650
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Entry
GKE62_16650 CDS
T06443
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GKE62_16650 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nog03400
]
GKE62_16650 (ligD)
Enzymes [BR:
nog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GKE62_16650 (ligD)
DNA repair and recombination proteins [BR:
nog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GKE62_16650 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGN55940
UniProt:
A0A6I5WX30
LinkDB
All DBs
Position
complement(3461261..3463819)
Genome browser
AA seq
852 aa
AA seq
DB search
MARSDPLAAYNAKRDFKLTAEPAGKREASATGKAGSTSGPGLFIVQKHDATRLHWDFRIE
VDGVLKSWAVTRGPSLDPEDKRLAVRTEDHPMAYAEFEGTIPKGEYGGGTVMLWDRGTWA
PIAGKSAKDIDKGHLHFTLAGERMNGEWIMIRLRPRPGEKRENWLLRKIADEFAEVGDVL
VERSLTSVLTKRTMAEIAADQAGEHSLKGQKGKAFTAIMADAAQHNATVAKPAAKPRKAK
PRKATAAKLPAFRPPQLATLVDAVPAGNSWFHEIKFDGYRALVAVKGGEVRVHTRNGLDW
TDKFAPLAKAIAALDLPPALIDGEIVSYDTDGNPDFSSLQAVLKRGHGAQTDATPLAFHA
FDLLELDGADLTTLTNIERKERLEALLAAAAPPIHVADHVIGAGEKLLRTMCDAGQEGII
SKRIDGKYAGKRSRDWLKVKCTRRQEFVIVGWKKSSAKGRPFSSLVLAQHEGKTLVYKGN
VGTGFTGDTLGDLAARMDKLEAADAPLNVPRAARRGVTWLKPELVAEIAFAEFTADGSVR
HGSFLGLRGDKPARDVSPETPVTVPTAETVKISNRDRPVFDSGQTKGDLADYYATIAPLM
LPFAAGRPVSLVRCPQGRGKKCFFQKHDAGTFGAHVHHVPIVEKDGGAEDYLWLDSAEGL
LSCVQMGTIEFHGWGSRASDVEHPDRLIIDLDPDEGLDFGDVKSAAKDIHDKLEDLGLVS
FAMLSGGKGVHVVVPLDAGHSWEVHKDFAKRFAEALSLAEPERFVATMSKAKRKGKIFID
WLRNQRGSTAVLPYSARAREGAPVAAPIAWGELAGFDNAHPWSIGDVNALLRRAKGKALA
GWGFAAQKLPDF
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
gtggctcgctccgatcccctcgctgcctacaatgccaagcgcgatttcaaactgacggcg
gaacccgcgggcaagcgagaggccagcgccaccggcaaggccggatccacgtccggccca
ggccttttcatcgtccaaaagcacgacgcgacccggctccattgggatttccgcatcgag
gtcgatggcgtgctcaaatcgtgggcggtgacgcgcggccccagcctcgatccggaggac
aagcggctcgcggtgcggaccgaagaccacccgatggcctatgccgaattcgagggcacg
attcccaagggcgaatatggcggcggcacggtgatgctgtgggaccgcggcacatgggcg
ccgatcgcggggaaaagcgccaaggacatcgacaaggggcacctccacttcaccctggcg
ggcgagcggatgaacggcgagtggatcatgatccgcctgcggccgcgcccgggcgagaag
cgcgagaactggctgctgcgcaagatcgccgacgagttcgcggaagtgggtgacgtgctg
gtcgaacgatcgctgaccagcgtgctgacgaagcgcacgatggcagaaatcgccgccgat
caggcgggcgagcattcgctcaagggtcagaaaggcaaggcgttcaccgcaatcatggcc
gatgcggcgcaacacaacgcgacggtcgccaagcccgcggccaagccgcgcaaggccaag
ccacgcaaggccacagcggcaaagctccccgccttccgcccgccccagctcgcgaccctc
gtcgatgccgtacctgcgggcaattcgtggttccacgagatcaagttcgacggctaccgc
gcgctggtcgcggtcaagggcggagaggtgcgcgtccacacccgcaacgggctcgactgg
accgacaagttcgctccgctcgccaaagccatcgccgcgctcgacctgccgcccgcgctg
atcgatggcgagatcgtgtcgtacgacacggacggcaaccccgacttctcctcgctccag
gccgtcctcaagcgcggccacggtgcgcagaccgacgccacccccctcgccttccacgcc
ttcgacctgctcgagctcgacggcgcggacctgaccacgctgaccaacatcgagcgcaag
gagcgccttgaagccctgctcgccgccgccgcgccgccgatccacgtcgccgaccacgtg
atcggcgcgggggagaaactgctgcggacgatgtgcgacgccggacaggaagggatcatc
tccaagcggatcgacggcaaatatgcgggcaagcgcagccgcgactggctcaaggtcaaa
tgcacccggcgccaggaattcgtgattgtcggctggaagaaatcgagcgccaagggccgc
ccgttctcgtcactggtgctcgcgcaacatgaaggcaagacgctggtctacaagggcaat
gtcggcaccggcttcaccggcgatacgctgggcgatctggccgcacggatggacaagctg
gaagccgccgacgcccctctgaacgtcccgcgcgccgcgcggcgcggggtcacctggctc
aagccggagctcgtcgccgagatcgcctttgccgaatttacagccgacggctcggtccgc
cacggcagcttcctggggttgcgcggcgacaaacccgccagggacgtgtcgcccgaaacg
ccggtcaccgtgccgacagcggaaaccgtcaagatctcaaaccgcgaccgtcccgtgttc
gacagcggccagaccaagggcgatctcgccgactactacgcgacgatcgccccgctgatg
ctgccgttcgccgccggccgcccggtcagcctcgtccgctgcccgcagggtcgcggcaag
aagtgcttcttccagaagcatgacgccgggacattcggcgcgcacgtccaccatgtgccg
atcgtcgagaaggacggcggggcagaggattacctgtggctcgacagcgccgaggggctg
ctgtcgtgcgtccagatggggacgatcgaattccacggctggggcagccgcgccagcgat
gtcgagcaccccgaccgcctcatcatcgatctcgatcccgacgagggcctcgatttcggc
gacgtcaaaagcgcggccaaggacatccacgacaagctcgaggacctgggcctggtcagc
ttcgcgatgctttcggggggcaagggcgtccacgtggtggttccgctcgacgccgggcat
tcgtgggaggtgcacaaggacttcgccaagcgtttcgccgaggcgctcagtctggccgag
cccgagcggttcgtcgcgacgatgagcaaggccaaacgcaagggcaagatcttcatcgac
tggctgcgcaaccagcgcggcagcaccgccgtgctgccctattcggcccgcgcccgcgaa
ggcgcgccggtggcggcgccgatcgcctggggcgagttggccggattcgacaacgcgcac
ccgtggtcgatcggggatgtcaacgcattgctccgaagagcgaaaggcaaggcgttggcg
ggatggggttttgctgcgcagaagctacccgatttctga
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