KEGG   Nordella sp. HKS 07: G5V57_17085
Entry
G5V57_17085       CDS       T06462                                 
Symbol
ligD
Name
(GenBAnk) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
noh  Nordella sp. HKS 07
Pathway
noh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:noh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G5V57_17085 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:noh03400]
    G5V57_17085 (ligD)
Enzymes [BR:noh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G5V57_17085 (ligD)
DNA repair and recombination proteins [BR:noh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G5V57_17085 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QIG49282
UniProt: A0A6G6WVK0
LinkDB
Position
complement(3629136..3631670)
AA seq 844 aa
MPAQRSQDRKAKKTAGRLDPYRAKRDFTKTTEPHAKIKREKAWRFAVQRHEARRLHFDLR
LELDGVLKSWAVARGISMVPGVKRLAVETEDHPLDYLTWEGTIPKGEYGGGTMIVWDRGT
WLAQGDPREGLKKGKLIFALNGERLKGHWHLVRMKRKPGEAKDQWLLFKGDDDYSIGAAD
PEPVATELTSVISGLTNEDLARRNEVRPDHRAREKIRRATGSKASDYSRLEGARKTILPV
FIEPALAEERDGPPNGKGWLHEIKHDGYRMQARIDGGKVKLLTRTGLDWTKRFPTIAKAL
TQLPLSSGLLDGEIVAQEDNGVSTFAALQSDLKNGRRDRLAYFLFDLLYCEGVNLTKVAL
KDRKAALETLCRAIPATSPLRYSAHMDEGDSRTIFAHACRMGLEGLVSKRADAPYRNGRN
ESWIKSKCALSQEFVIIGYVPSSTSRQAVGSLILGFYEGKELVHAGRAGTGFTDETALAL
RSGLATIETKQPPFKRPVDKASLQNVRWVEPRFVADIQFRGWSPEKLLRQAAFKGLREDK
APHEVTLEIPQGKTMKQAKRATSDVRLTHPDRILWPDDGITKQGLAEFYSDIAEWILPHI
TGRVLSLVRCPGGVGKSCFYAKHVWDGADKALLPIDVGEAEPMLAIRDLDGLIALVQANV
LEIHPWGSRVETLEKPDRIIFDLDPGEDVAWEDVIAGALEVKQRLKAVGLESFVKTTGGK
GLHVVSPLTPRADWEAAKEFTRKLAEAMAADNPRKYLAVMTKARRKGRIFVDYLRNGRGA
TAVAAYSTRARTGAAVSVPLTWKELETGIRANHFTIDNLRQRLSHRRRDAWAGFFEIKQK
LPAS
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgccggcgcaacgctcgcaggataggaaagccaagaaaaccgccgggcgcctcgatcct
tatcgagccaagcgcgatttcaccaagacaacggagccgcatgccaagatcaagcgcgag
aaggcttggcgatttgcggtgcagcgacatgaggcgcgccgtctccatttcgatctgcga
ttggaactcgatggtgtgctcaagagctgggccgtcgccaggggcattagcatggtaccg
ggcgtcaagcggctggcagtcgagaccgaggatcatccgctcgactatctgacctgggaa
ggcaccattcccaagggcgaatatggcggcggcacgatgatcgtgtgggacagaggcact
tggctcgcccagggcgacccgcgcgaaggcctgaagaagggcaagctcatctttgcgctc
aacggcgaaagactgaaaggccactggcatctggtgcgcatgaaacgaaagcccggcgaa
gcgaaggaccaatggctgctgttcaagggcgacgacgactattccatcggcgcggccgac
ccggaaccggtggcgaccgagctcacttccgtcatttccggtctcaccaatgaggatctg
gcgcggcgcaatgaggtccgtcccgatcatagagcgcgcgagaagatcaggcgcgccacc
ggctcgaaggcctcggattacagcaggctcgaaggcgccaggaagaccattctgccagtg
ttcatcgaacccgccttggccgaagagcgggatggaccgcccaatggcaaggggtggctg
cacgagatcaaacatgacggctatcgcatgcaggccaggatcgacggcggcaaggtcaag
ctcctcacgcgcaccggactcgactggacaaagcgcttccccaccatcgccaaggccctc
acacaactgccgctgagctcaggcctgctcgacggcgagatcgtcgcgcaggaagacaat
ggcgtgtccactttcgccgcgctgcagagtgatctcaagaacgggcggcgcgatcgtctc
gcctatttcctgttcgatctcctctattgcgagggcgtcaacctcaccaaagtggctctg
aaggaccgaaaggcggcgctcgagacgctgtgccgcgccattcccgcgacttcgcctctg
cgctacagcgcgcatatggatgagggcgacagccgcaccattttcgcccatgcctgccgg
atggggctcgaaggcctcgtctcgaagcgggccgacgcgccctatcgcaacggccgcaac
gaaagctggatcaagagcaaatgcgcgttgagccaggaattcgtcatcatcggctatgtg
ccctcctccacctcgcggcaggcggtcggctcgctgattctgggtttctatgagggcaaa
gagcttgtccatgccgggcgcgccggcaccggtttcaccgacgagaccgcattggcgctc
agaagcgggcttgcgacgatcgaaacgaagcagcctccattcaagcggccagtagacaag
gcgtcgctgcagaatgtgcgctgggtcgagccaagattcgtggccgacattcagttcaga
ggctggagccccgaaaagcttctgcgccaggccgccttcaagggcctgcgcgaagacaag
gcaccgcatgaggtcacgctggaaattccgcagggcaagacgatgaaacaggcaaagcgt
gcaacgagcgacgtccggttgacccatcccgaccgcatcctctggcccgacgacggcatc
accaagcaagggctcgccgagttctacagcgacatcgccgagtggatcctgccgcatatc
accgggcgggtgttgagtctcgtgcgctgtccgggcggcgtcggaaaatcctgcttctat
gccaagcatgtctgggacggcgccgacaaggcgctcctgcccatcgatgtcggcgaggcc
gagccgatgctcgccattcgcgatctcgacgggctgatagcactggtgcaggccaatgtg
ctggagatccatccctggggctcgcgcgtcgaaacgctcgaaaagccggatcgcatcatc
ttcgatctcgatcccggcgaagatgttgcctgggaagacgtcattgccggcgccctcgag
gtcaagcaacgcctcaaggcggtcggtctggagagctttgtcaagacgaccggcggcaag
ggtctgcatgtggtgagcccgctcacccccagagccgattgggaagcggcgaaggagttc
acccgaaagctcgccgaggcgatggcggcggataatccccgcaaatatctggcggtgatg
accaaggcgcggcgcaagggccgcatcttcgtcgattatctgcgcaacgggcggggcgcg
accgcggtggcggcctattcgacacgggcacggacaggtgcggcggtctcggtgccgctc
acctggaaggagctcgagaccggcatccgcgccaaccattttaccatcgacaatcttcgc
cagcggctgagccaccgccgacgcgatgcgtgggccggcttcttcgagatcaagcagaag
ctgcccgcatcctag

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