Nordella sp. HKS 07: G5V57_17085
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Entry
G5V57_17085 CDS
T06462
Symbol
ligD
Name
(GenBAnk) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5V57_17085 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noh03400
]
G5V57_17085 (ligD)
Enzymes [BR:
noh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5V57_17085 (ligD)
DNA repair and recombination proteins [BR:
noh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5V57_17085 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIG49282
UniProt:
A0A6G6WVK0
LinkDB
All DBs
Position
complement(3629136..3631670)
Genome browser
AA seq
844 aa
AA seq
DB search
MPAQRSQDRKAKKTAGRLDPYRAKRDFTKTTEPHAKIKREKAWRFAVQRHEARRLHFDLR
LELDGVLKSWAVARGISMVPGVKRLAVETEDHPLDYLTWEGTIPKGEYGGGTMIVWDRGT
WLAQGDPREGLKKGKLIFALNGERLKGHWHLVRMKRKPGEAKDQWLLFKGDDDYSIGAAD
PEPVATELTSVISGLTNEDLARRNEVRPDHRAREKIRRATGSKASDYSRLEGARKTILPV
FIEPALAEERDGPPNGKGWLHEIKHDGYRMQARIDGGKVKLLTRTGLDWTKRFPTIAKAL
TQLPLSSGLLDGEIVAQEDNGVSTFAALQSDLKNGRRDRLAYFLFDLLYCEGVNLTKVAL
KDRKAALETLCRAIPATSPLRYSAHMDEGDSRTIFAHACRMGLEGLVSKRADAPYRNGRN
ESWIKSKCALSQEFVIIGYVPSSTSRQAVGSLILGFYEGKELVHAGRAGTGFTDETALAL
RSGLATIETKQPPFKRPVDKASLQNVRWVEPRFVADIQFRGWSPEKLLRQAAFKGLREDK
APHEVTLEIPQGKTMKQAKRATSDVRLTHPDRILWPDDGITKQGLAEFYSDIAEWILPHI
TGRVLSLVRCPGGVGKSCFYAKHVWDGADKALLPIDVGEAEPMLAIRDLDGLIALVQANV
LEIHPWGSRVETLEKPDRIIFDLDPGEDVAWEDVIAGALEVKQRLKAVGLESFVKTTGGK
GLHVVSPLTPRADWEAAKEFTRKLAEAMAADNPRKYLAVMTKARRKGRIFVDYLRNGRGA
TAVAAYSTRARTGAAVSVPLTWKELETGIRANHFTIDNLRQRLSHRRRDAWAGFFEIKQK
LPAS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgcaacgctcgcaggataggaaagccaagaaaaccgccgggcgcctcgatcct
tatcgagccaagcgcgatttcaccaagacaacggagccgcatgccaagatcaagcgcgag
aaggcttggcgatttgcggtgcagcgacatgaggcgcgccgtctccatttcgatctgcga
ttggaactcgatggtgtgctcaagagctgggccgtcgccaggggcattagcatggtaccg
ggcgtcaagcggctggcagtcgagaccgaggatcatccgctcgactatctgacctgggaa
ggcaccattcccaagggcgaatatggcggcggcacgatgatcgtgtgggacagaggcact
tggctcgcccagggcgacccgcgcgaaggcctgaagaagggcaagctcatctttgcgctc
aacggcgaaagactgaaaggccactggcatctggtgcgcatgaaacgaaagcccggcgaa
gcgaaggaccaatggctgctgttcaagggcgacgacgactattccatcggcgcggccgac
ccggaaccggtggcgaccgagctcacttccgtcatttccggtctcaccaatgaggatctg
gcgcggcgcaatgaggtccgtcccgatcatagagcgcgcgagaagatcaggcgcgccacc
ggctcgaaggcctcggattacagcaggctcgaaggcgccaggaagaccattctgccagtg
ttcatcgaacccgccttggccgaagagcgggatggaccgcccaatggcaaggggtggctg
cacgagatcaaacatgacggctatcgcatgcaggccaggatcgacggcggcaaggtcaag
ctcctcacgcgcaccggactcgactggacaaagcgcttccccaccatcgccaaggccctc
acacaactgccgctgagctcaggcctgctcgacggcgagatcgtcgcgcaggaagacaat
ggcgtgtccactttcgccgcgctgcagagtgatctcaagaacgggcggcgcgatcgtctc
gcctatttcctgttcgatctcctctattgcgagggcgtcaacctcaccaaagtggctctg
aaggaccgaaaggcggcgctcgagacgctgtgccgcgccattcccgcgacttcgcctctg
cgctacagcgcgcatatggatgagggcgacagccgcaccattttcgcccatgcctgccgg
atggggctcgaaggcctcgtctcgaagcgggccgacgcgccctatcgcaacggccgcaac
gaaagctggatcaagagcaaatgcgcgttgagccaggaattcgtcatcatcggctatgtg
ccctcctccacctcgcggcaggcggtcggctcgctgattctgggtttctatgagggcaaa
gagcttgtccatgccgggcgcgccggcaccggtttcaccgacgagaccgcattggcgctc
agaagcgggcttgcgacgatcgaaacgaagcagcctccattcaagcggccagtagacaag
gcgtcgctgcagaatgtgcgctgggtcgagccaagattcgtggccgacattcagttcaga
ggctggagccccgaaaagcttctgcgccaggccgccttcaagggcctgcgcgaagacaag
gcaccgcatgaggtcacgctggaaattccgcagggcaagacgatgaaacaggcaaagcgt
gcaacgagcgacgtccggttgacccatcccgaccgcatcctctggcccgacgacggcatc
accaagcaagggctcgccgagttctacagcgacatcgccgagtggatcctgccgcatatc
accgggcgggtgttgagtctcgtgcgctgtccgggcggcgtcggaaaatcctgcttctat
gccaagcatgtctgggacggcgccgacaaggcgctcctgcccatcgatgtcggcgaggcc
gagccgatgctcgccattcgcgatctcgacgggctgatagcactggtgcaggccaatgtg
ctggagatccatccctggggctcgcgcgtcgaaacgctcgaaaagccggatcgcatcatc
ttcgatctcgatcccggcgaagatgttgcctgggaagacgtcattgccggcgccctcgag
gtcaagcaacgcctcaaggcggtcggtctggagagctttgtcaagacgaccggcggcaag
ggtctgcatgtggtgagcccgctcacccccagagccgattgggaagcggcgaaggagttc
acccgaaagctcgccgaggcgatggcggcggataatccccgcaaatatctggcggtgatg
accaaggcgcggcgcaagggccgcatcttcgtcgattatctgcgcaacgggcggggcgcg
accgcggtggcggcctattcgacacgggcacggacaggtgcggcggtctcggtgccgctc
acctggaaggagctcgagaccggcatccgcgccaaccattttaccatcgacaatcttcgc
cagcggctgagccaccgccgacgcgatgcgtgggccggcttcttcgagatcaagcagaag
ctgcccgcatcctag
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