Nordella sp. HKS 07: G5V57_29095
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Entry
G5V57_29095 CDS
T06462
Symbol
mfd
Name
(GenBAnk) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5V57_29095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noh03400
]
G5V57_29095 (mfd)
Enzymes [BR:
noh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5V57_29095 (mfd)
DNA repair and recombination proteins [BR:
noh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5V57_29095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_16
UB2H
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIG51418
UniProt:
A0A6G6X1G6
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All DBs
Position
complement(6164114..6167599)
Genome browser
AA seq
1161 aa
AA seq
DB search
MIDSKRLTERLGLSGRTIVSGVLEGLDAMAAAEAARLLAGKPLVHIALDDQRMASLAEAL
AFFAPDVEVISFPAWDCLPYDRVSPAANVVARRLAALAALAIRSKAPRILLTSVNAALQR
LPEGRVIAETTFQAAPGQYVDTEKLQLFLQHNGYSRTGTVVDAGDFAVRGGIIDIFPPGA
EGPVRLDFFGDALESVRRFDPQSQRSTGTLRSLVLHPASEVLLTPESIGRFRTSYAAAFG
GLDINDPLYESVTNGRRYQGMEHWLPLFHDKLETIFDHAREGAVSLDHSADEAVVARHEQ
IAEFYDARREALTQDTFGAAPYKPLKPQALYLTQQEWTELLVDRSVLAFTPFETPDSAVA
PVLSIGGRQGRSFAAERAEAGANVYEAVRGHANALRANGKRVVIATWSEGSAERLETILR
DHDVSPLAQGKDWAEVRNRPRDIVSIVVLGLEAGFESGDLAVLSEQDILGDRLVRRGRKA
RKPADFISELSALTPGDLIVHVDHGLGRFEGLKTIEVQGAPHDCLFIMYAGNDRLFLPVE
NIELLSRYGSDEEGANLDRLGGGAWQAKKAKLKERIREIAENLIKTAAARELKPGEILPP
PDGLYDEFCARFPYEETEDQLAAIEATLEDLQKGRPMDRLICGDVGFGKTEVALRTAFVA
AMNGKQVAVVVPTTLLSRQHFATFNQRFQGLPLRLAQASRLVGRKEIEAVKDGLAKGEID
IVIGTHALLAESVKFRDLGLLIIDEEQHFGVKHKERLKELRANVHVLTLTATPIPRTLQL
ALSGVRELSLITTPPLDRLAVRTYISPFDPVVIRESLLREHFRGGQSFYVCPRVADLEEQ
ADFLRNHVPEIKFRTAHGRMAPTELEDIMSGFYDRKFDVLLSTTIVESGLDIPTANTLIV
HRSDMFGLAQLYQIRGRVGRSKQRAYALLTTPANRTMTPAAEKRLKVLQSLDSLGAGFTL
ASHDLDIRGAGNLLGDEQSGHVKEVGYELYQSMLEEAVAKLRTGEETLEAEGTWSPQINI
GTSVLIPEPYVPDLQLRLGLYRRLADLQEESELDGFGAELHDRFGRIPEEVKHLLDVVSI
KILCRKANVASVDAGPKGAVIGFRGDQVGNPKKLVEWITGQGSLAKLRPDMKLVIMRSWD
TPEDRLKGARQIMTQMVKLAA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacagcaaacgcctcaccgaacgcctgggactttccgggcgcaccatcgtttca
ggagtcctggagggcctcgacgcgatggcggccgccgaagcggcccggcttctcgccggc
aagccgctggtgcacatagcgctcgacgatcagcgcatggcgagcctcgccgaggccctc
gccttctttgcgcccgatgtcgaggtgatctcgtttccggcctgggactgcctgccttat
gaccgagtgtcgccggcggcgaatgtcgtggcgcgccggctcgcggcgctcgcggccctg
gcgatccggagcaaggcgccgcgcattcttctgaccagcgtaaacgcggctctgcagcgc
ctgccggaagggcgcgtcatcgccgagacgaccttccaggctgctcccgggcaatatgtc
gacacggagaagctgcagctcttcctgcagcacaatggctattcgcgcaccgggacggtg
gtcgacgccggcgatttcgccgtccgtggcggcatcatcgacatcttcccgcccggcgcc
gaaggaccggtccggctcgatttcttcggcgacgcgctcgaatcggtgcgccgcttcgac
ccgcagtcacaacgctcaaccgggacgctgcgctcgctcgtgctgcatccggcgagcgaa
gtgctgctcacacccgaatcgatcggccgttttcgcacctcctatgcggcggccttcggt
ggtctcgacatcaacgacccgctttatgaatcggtgaccaacgggcggcgctaccagggc
atggagcactggctgccgcttttccacgacaagctggaaacgatcttcgaccatgcgcgc
gaaggcgcggtctcgctcgatcattcggcggacgaggcggttgtggcgcggcacgaacag
atcgccgaattctacgatgcgcggcgcgaggcgctgactcaggacacatttggcgcggca
ccctacaagccgctcaagccccaggctctctatctcacgcagcaggaatggaccgagctt
ctcgtcgacaggagcgtgctcgccttcacgccgttcgagacgccggacagcgccgttgcg
ccggttctgtcgattggcggccggcaggggcgcagctttgcggcggaacgcgccgaggcc
ggcgccaatgtctatgaggcggtgcgcgggcatgccaatgcgttgcgcgccaacggcaaa
cgggtcgtcatcgccacctggtcggaaggctcggccgagcgcctcgagaccatcctgcgc
gaccacgatgtgtcgccgctcgcccagggtaaggactgggccgaggtgcggaatcgcccc
cgggacatcgtcagcatcgtcgtgctcgggctcgaagccggtttcgaaagcggcgatctc
gccgtgctctccgagcaggacatattgggggaccgcctggtgcggcgcggccgcaaggcg
cgcaagcctgccgatttcatctccgaactgtcggcattgaccccgggcgatctgatcgtc
catgtcgatcacggtctcggccgctttgaaggcctcaagaccatcgaggtgcagggcgcc
ccgcatgactgcctcttcatcatgtatgccggcaatgaccggctgttcctccccgtggag
aatatcgagctcctgtcgcgctacggctcggacgaggagggcgccaatctcgaccgcctg
ggtggcggcgcctggcaggcgaagaaggcgaagctcaaagaacgcatccgcgagatcgcc
gagaatctgatcaagacggcggccgcccgcgaactcaagccgggcgagatcctgccgccg
cccgacgggctctatgacgagttctgcgctcgcttcccctatgaggagacggaagaccag
ctcgctgccatcgaggcgacattggaggacctgcagaagggacgtccgatggaccgtctc
atctgtggcgatgtcggcttcggcaagaccgaggtggcgctgcgcacggccttcgtggcg
gcgatgaacggcaagcaggtggcggtcgtcgtgccgacgacgctgctgtcgcgccagcac
ttcgccaccttcaaccagcgcttccagggccttccgctcaggctcgcccaggcctcgcgc
ctggtcgggcgcaaggagatcgaggcggtgaaggatgggctcgccaagggcgagatcgac
atcgtgatcgggacccacgcgctgctcgccgaaagcgtcaaattccgcgatctgggcctt
ctcatcatcgacgaggagcagcatttcggcgtcaagcacaaggagcggctcaaggaactg
cgcgccaatgtgcatgtgctgacgctgaccgcgacacccattccgcgcaccttgcagctc
gcgctgtcgggcgtgcgcgagctgtcgctcatcaccacgccgccgctcgatcggctggcg
gtacgcacctatatctcgcccttcgatccggtggtcatccgcgagtcgctgctgcgtgag
catttccgcggcggccagagcttctatgtgtgcccgcgcgtcgccgatctcgaggagcag
gccgacttcctgcgcaatcatgtgccggaaataaaattccgcaccgcccacgggcgcatg
gcgccgaccgagctcgaagacatcatgagcggcttctatgaccgcaagttcgatgtgctg
ctgtcgacgaccatcgtcgaatccggcctcgatatcccgaccgccaacacgctgatcgtt
caccgctccgacatgttcggcctggcccagctctaccagatccgcggccgtgtcggacgc
tccaagcagcgcgcttatgcgctgttgacgacacctgccaaccgcacgatgacgccggcg
gcggagaagcgcctcaaggtgctgcaatcgcttgattcactgggcgccggtttcaccctg
gcgagccacgatctagacatccgcggtgccggcaatctgcttggcgacgagcagtcgggc
catgtgaaggaggtgggctacgagctctatcagtccatgctcgaagaggcggtggccaaa
ttgcgcacgggcgaggagacgctcgaagccgaaggcacgtggtcgccgcagatcaatatc
ggcacgtccgttctcatccccgaaccctatgtgccggatctgcaactgcggctcggcctc
tatcgccgcctcgccgatctccaggaggagagcgagctcgacggctttggcgccgaattg
cacgatcgcttcgggcgcatcccggaagaggtgaagcatcttctcgatgtggtgtcgatc
aagatcctgtgccgcaaagccaatgtggcgagcgtcgatgccgggcccaagggcgcggta
atcggcttccgcggcgatcaggtcggcaatccgaagaagctcgtggagtggatcacgggg
cagggtagcctggccaagctgcgccccgatatgaagctggtaatcatgcggagctgggat
acgccagaagatcgcctcaagggcgcccgacagatcatgacccagatggtgaagctggca
gcttag
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integrated database retrieval system
