Nocardioides jishulii: FCL41_03965
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Entry
FCL41_03965 CDS
T06163
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noi
Nocardioides jishulii
Pathway
noi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FCL41_03965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noi03400
]
FCL41_03965
Enzymes [BR:
noi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FCL41_03965
DNA repair and recombination proteins [BR:
noi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FCL41_03965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCX26791
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All DBs
Position
838364..839305
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AA seq
313 aa
AA seq
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MRPMLATRGDHVPTGPDWVHEVKWDGMRVIVEVTGGRARLTSRNGNDVTSTFPELSTLAL
PDLVLDGEVVAFTDGRPDFGALATRLQRSGRGARMRAEVVPVTLLVFDLLRLGEQDLRGL
PLSERRELLDSLHLGDDQVQVPPTYDDGQMLLEATRAQELEGIVSKRLASRYEEGVRSRS
WLKFAHRSRTSWVVGGWRHETGSPARIGAVLVGEPTADGFRYRGRVGSGITGRTGVALKE
LLVARAADASPFDEELPRADALGTHWVRPEVVVDVESLGFSANGRLRQPSFRGVRVDLTP
ADLLTQSREADDA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgatgctcgccacccgtggagaccacgtgcccaccgggcccgactgggtccac
gaggtgaagtgggacgggatgcgcgtgatcgtcgaggtcaccgggggccgcgcgcggctc
acgagtcgcaacggcaacgacgtgacgtcgaccttccccgagctcagcacgctcgcgctc
cccgacctcgtgctcgacggcgaggtggtcgccttcaccgacggccgccccgacttcggc
gcgctggcgacccggctccagcgcagcggccgcggcgcccggatgcgggccgaggtggtg
ccggtgacgctgctggtcttcgacctgctccgcttgggggagcaggacctgcgcggactg
cccctgtcggagcggcgcgagctgctcgactccctgcacctgggcgacgaccaggtgcag
gtgcccccgacgtacgacgacgggcagatgttgctggaggccacccgtgcgcaggagctg
gagggcatcgtctccaagcggctggcctcgcgctacgaggagggcgtacgcagccgcagc
tggctcaagttcgcccatcgctcgcggacgtcctgggtggtcggagggtggcgccacgag
accgggtcgccggcgcggatcggggcggtgctggtgggggagccgaccgcggacggcttc
cgctaccgcggtcgggtcgggtcgggcatcaccggacggaccggcgtcgccctcaaggag
ctgctggtggcccgtgccgccgacgcctccccgttcgacgaggagctgccgcgcgccgac
gcgctgggcacgcactgggtacgtcccgaggtcgtggtcgacgtggagtcgttgggcttc
tcggccaacggccgcctgcgacagccgtccttccgcggcgtgcgcgtcgacctgacgccg
gccgacctgctcacccagtcgagggaggcggacgatgcctga
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