Nocardioides jishulii: FCL41_11405
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Entry
FCL41_11405 CDS
T06163
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
noi
Nocardioides jishulii
Pathway
noi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCL41_11405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noi03021
]
FCL41_11405
03019 Messenger RNA biogenesis [BR:
noi03019
]
FCL41_11405
Transcription machinery [BR:
noi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FCL41_11405
Messenger RNA biogenesis [BR:
noi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FCL41_11405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Motif
Other DBs
NCBI-ProteinID:
QCX28054
LinkDB
All DBs
Position
complement(2411039..2413027)
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AA seq
662 aa
AA seq
DB search
MSETGETGAAAPKKKATSINSMLLADLKAVAQGIGIQGAASMKKAQLIEAIKATQDAHAQ
RSAQPETSPDAAAGEGAQAPAVRTTQRTRGERATRASRSAADASVSPQGDAAPEAAAEAT
AEAGAQPSQGGERRRERSRQGQQQDQQGDQPRAQKADQSAKGQQAKQDQPKQDQPKQDQA
KQDQPKKDKSGKQGKGQDRSQERTQDKGQDRSGQQDQNQGKQDQGGQSPAKGQQQGKQDQ
NQNRDDDDYDDDGTGRRSRRRRGRERSTGRPGRAEPDTTILEDDVLVPAAGILDVLDNYA
FVRTSGYLPGPDDVYLSLSMVRKYGLRRGDALVGQVRHPREGERREKFNPMVRIDSVNGM
DPENAKERPEFSEFTPIHPEERLRLETDDTNLLGRVVDVAAPIGKGQRGLVVAPPRSGKT
EVVGAIASSVSRNNPECHLMVVLIDERPEEVTDYQRSIRGEVIASTFDRPAGDHILIAEL
AVERAKRLVELGHDVVVLMDSLTSLGRAYQTVAPASGKVVHGGVDAAALHPAKQLFGAAR
NVEDGGSLTILATAIVETGSSSDDAIFEEFAGTANMELVLRGELARRRIFPPVDVVASST
RREEHLLGEQEQQILLKLRTALMDVEPLVALEAVLARMGKTQNNVEFLNRVQQSTPEALL
KG
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagacaggcgaaaccggcgctgctgcgccgaagaagaaggccaccagcatcaac
tccatgctgctggccgacctgaaggcagtcgcgcaggggatcggcatccagggtgccgcc
tccatgaagaaggcgcagctgatcgaggccatcaaggcgacccaggacgcgcacgcccag
aggagtgcccagccggagacgtcgccggacgccgccgctggcgagggggcgcaggctccg
gccgtgcgcaccacgcagcgtacgcggggtgagcgcgccacgcgtgcctcccgcagtgcc
gccgacgcgtcggtgtcgccgcagggtgacgcagccccggaggccgctgccgaggcgacc
gccgaggccggcgcgcagccctcgcagggtggggagcgacggcgcgagcgcagccgccag
ggtcagcagcaggaccagcagggtgaccagccccgtgcccagaaggccgaccagtcggcc
aaggggcagcaggccaagcaggaccagccgaagcaggaccagccgaagcaggaccaggcg
aagcaggaccagcccaagaaggacaagtcgggcaagcagggcaagggtcaggaccgcagc
caggagcgcacccaggacaagggccaggacaggtccggccagcaggaccagaaccagggc
aagcaggaccagggcggccagagcccggccaagggtcagcagcagggcaagcaggaccag
aaccagaaccgcgacgacgacgactacgacgacgacggcacgggccgtcgcagccgccgt
cgccggggccgcgagcgcagcaccgggcgtccgggccgcgccgagccggacacgacgatc
ctcgaggacgacgtgctcgtcccggcggcgggcatcctcgacgtgctcgacaactacgcc
ttcgtccgcaccagcggctacctgccggggcccgacgacgtctacctgtcgctctcgatg
gtccgcaagtacggactgcgtcgcggagacgccctcgtcggtcaggtccgccacccgcgt
gagggcgagcgtcgggagaagttcaacccgatggttcgcatcgactccgtcaacgggatg
gaccccgagaacgccaaggagcgcccggagttcagcgagttcaccccgatccacccggag
gagcggctccggctggagaccgacgacaccaacctcctcggtcgggtggtcgacgtcgcc
gcgccgatcggcaagggccagcgcggcctggtcgtcgcgccgccgcgctccggcaagacc
gaggtggtcggggccatcgcgagctcggtgagccgcaacaaccctgagtgccacctcatg
gtcgtgctcatcgacgagcggcccgaggaggtgaccgactaccagcgctcgatccggggt
gaggtcatcgcctccacgttcgaccgcccggccggtgaccacatcctgattgccgagctc
gcggtcgagcgggccaagcgcctggtcgagctggggcacgacgtggtggtgctgatggac
tcgctgaccagcctcggtcgcgcctaccagacggtcgcgccggccagcggcaaggtcgtg
cacgggggagtggacgccgcggcgctgcaccccgccaagcagctcttcggggctgcccgc
aacgtcgaggacggcggctccctgacgatcttggccacggccatcgtcgagaccgggtcg
tcctccgacgacgcgatcttcgaggagttcgccggcacggccaacatggagctggtgctg
cgcggcgagctcgcccgccggcggatcttcccgccggtcgacgtggtggcctcgtccacc
cgccgcgaggagcacctgctcggcgagcaggagcagcagatcctgctcaagctgcgtacg
gcgctgatggacgtggaaccgttggttgcgctggaggccgtgctcgctcggatggggaag
acgcagaacaacgtcgagttcctcaaccgggtccagcagtccactcctgaggctctgctc
aagggctga
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