Nonlabens ponticola: EJ995_03785
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Entry
EJ995_03785 CDS
T05856
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noj
Nonlabens ponticola
Pathway
noj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJ995_03785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noj03400
]
EJ995_03785 (mfd)
Enzymes [BR:
noj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJ995_03785 (mfd)
DNA repair and recombination proteins [BR:
noj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJ995_03785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AZQ43397
UniProt:
A0A3S9MW90
LinkDB
All DBs
Position
832286..835630
Genome browser
AA seq
1114 aa
AA seq
DB search
MAYTDILQSYSHLPQTQQLLDHLAQDHGAIQVAGLTGSALSIELQTLFEQSDKPFLLICN
DKEEAAYYLNDLEKMIGEERVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSKRKPAV
IVTYPDALFEKVVTRKELEKNTLKIAVGDQISIDFANEVLFEYAFKRVDFVTEPGEFSLR
GGILDVFSFSNEEPYRIEFFGNEIDSIRIFDVETQLSKDQIKKISIIPNVENKKSDERRE
SFLKYLSSKTVVFAQHLDLMYARVDSLFAKAEQAYQKLDGGIKQLTPDEIFCKSALLKKQ
LEKYTTVEFTGSDPAVRFSTSPQPSFNKQFDILVDTLRENEKRGFKTYLLCGTAQQAKRF
KDIFDDMNAQVSYETVTMTLYKGFVDADLKIACYTDHEIFDRYHKFHLKNGYAKKQAITL
KELNTLVIGDYVTHIDHGIGKFGGLQKIDVNGKMQEAIKLFYGERDILYVSIHSLHKITR
YAGKDGKTPKIYKLGSPAWKKLKAKTKTKVKQIAFDLIKLYAKRRARKGFQYEPDGYLQN
ELEASFIYEDTPDQSAATQDVKNDMESDRPMDRLVCGDVGFGKTEVAIRAAFKAAVSGKQ
VAVLVPTTVLAFQHAKTFKERLADMPVTVDYLNRFRTAKERRTVLEGLENGTIDIVIGTH
QLVNKSVKFKDIGLLIIDEEQKFGVAVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTPPPNRHPIESRVVRFSEEVIRDAVSYEISRGGQVFFVHNRIENIKEVAGMIQR
SVPDAKVGIGHGQMDGKKLEELMLAFMNNEFDVLVSTTIIESGLDVPNANTIFINNANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYDMMTDDARKRIQAIENFSELGSGFNIAMKDLE
IRGAGDILGGEQSGFMNEIGFDTYQKILSEAIEELKENEFKELYPTDEIKTKHVSDVTID
TDFELLFPDDYINSVTERLALYSKLNEVDDQLQLTQYRKELVDRFGELPDQAEDLLTSIK
IKWIASRIGLEKIVMKQGKFIGYFIADQSSSFYQTETFSYLLQAVNSSGKTMQLKEKQTR
SGLRLLLKMEQCKSVDQALANLDKILPVEEIVST
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttggcttacacagatattctccagtcatattctcatttaccacaaacccaacaattgctg
gatcatctagcgcaggatcacggtgcgattcaagtagctggtctcactggtagtgcgtta
tcgattgagttgcaaaccttatttgagcaaagcgacaagccttttttacttatatgcaac
gacaaggaagaagccgcctattatctcaacgatctagaaaaaatgataggcgaggaacgt
gtgctgttttatccaggaagctatcgacgaccttaccagattgaggaaacagataatgcc
aatgtccttttaagggctgaggtgctcaaccgaatcaattcaaaacgcaagccagcggtt
attgttacatatccagacgcattgtttgaaaaggtagtcacgcgcaaggaattggagaaa
aacacgctcaagattgccgttggtgatcaaataagcattgattttgcaaacgaggtgctg
tttgaatatgccttcaagcgcgtcgattttgtgacagaacctggtgaattctcattgcgc
ggtggtatcctcgatgtgttctcattttctaatgaagagccttatcgtatagagtttttt
ggcaacgagattgatagcatacgcatctttgatgtggagacacaactgtctaaagatcag
attaaaaagatatccataattcctaatgtggagaacaagaagtctgatgagcgacgtgag
agtttcttgaaatacttgtcaagtaagacggttgtatttgcccaacatcttgatttgatg
tatgctcgtgttgattcgcttttcgcgaaagcggaacaagcctaccaaaaacttgatggt
ggcattaagcaattaactccagacgagattttctgcaagtcggccttgcttaagaagcaa
ttggagaaatacacgacagttgaatttaccggtagcgacccagctgtgcgattcagcacc
agcccgcaaccatctttcaataagcagtttgatatattggtggacacgctgcgagaaaat
gagaaacgtggattcaagacttatctgctgtgcggtactgcacagcaagcaaagcgtttc
aaggacatttttgacgacatgaatgcgcaggtttcctatgaaacggtgaccatgacattg
tataaaggatttgtagatgcagatttaaaaatcgcttgttacacagatcatgagattttt
gatcgttatcataagttccacttgaagaatggctatgccaaaaagcaagccatcacgctc
aaggaactcaatacgctggtcataggtgattatgttacgcatattgatcacggtataggg
aaatttggtggactccaaaagatcgatgtcaacggcaagatgcaggaagctatcaagctg
ttttatggcgagcgcgatattttatatgtctcgattcactcgctacataagatcacgaga
tatgctggtaaagacggcaagacgcctaagatctacaagctaggtagtccagcctggaaa
aaactaaaagccaaaaccaagactaaggtcaagcaaattgcttttgacctgatcaaatta
tatgcaaagcgacgcgctcgcaaagggtttcaatacgagccagatggttatttgcaaaat
gagctagaggctagttttatttatgaggatacaccagatcaaagtgcagcgacacaagat
gtaaaaaatgacatggaaagcgatcgtcccatggatcgattggtctgtggtgatgtagga
ttcggtaagactgaagttgccatacgtgctgcgtttaaggctgcggtgagtggcaaacaa
gttgctgtgctcgtgccaacaactgttctagcttttcagcatgccaagacttttaaggag
cgccttgccgacatgccagttacggtagattatttgaatcgtttccgtacggcaaaggag
cgtcgcacggtacttgaaggacttgaaaacggaaccatcgatatcgtgataggcactcac
cagctggtcaataagtcggttaagtttaaagacataggactgttgattatcgatgaggag
caaaaatttggagttgcagtaaaagataagctcaaaaccttaaaggaaaacattgacacg
ctcacgcttactgctacgcctataccgcgtacgctgcaattctcattaatggccgcacgt
gatttgagcgttataaaaacgccaccacccaatcgtcaccctattgagtctcgcgtggta
cgattttctgaagaagtgatacgtgacgcggtaagctatgagatttcccgtggtggtcag
gtattttttgtccacaatcgtattgagaacattaaggaagtagcaggtatgatccagcga
tctgttccagatgctaaggtaggtataggtcacggtcagatggatggaaaaaagctggaa
gaattgatgctggcttttatgaataatgagtttgacgtactggtaagtaccaccatcatt
gagagtggtcttgacgtgcctaatgcgaataccatcttcatcaataacgccaataacttt
ggactatcagacctgcatcaaatgcgtggtcgagtgggccgcagtaataaaaaggccttt
tgttatttcatcacgccaccatatgatatgatgactgatgatgctcgcaaaagaatccaa
gcaattgagaatttctctgagttgggtagtggtttcaacatcgccatgaaagatcttgag
atacgtggtgctggagatattttgggtggcgagcaaagtggtttcatgaatgagatagga
tttgatacctatcaaaaaatcctgagcgaagccatagaagagctcaaggaaaatgagttc
aaagaactctatcctacggatgagatcaagaccaaacatgtaagcgatgtcacgattgat
acagattttgaattattgttcccagatgattacatcaacagtgttacagagcgtcttgca
ttgtactcaaaactcaatgaggtagatgatcagctgcaattaacgcagtaccgcaaggaa
ttggtagaccgttttggtgaactgccagaccaggcggaagatctgttgaccagcatcaag
atcaagtggatcgccagtcgcataggtctggaaaagatcgtgatgaagcaaggcaagttc
ataggttactttatcgcagatcagtcgagcagtttttaccagacagagaccttcagctat
ctattgcaagcagtgaacagcagtggcaaaactatgcagctaaaagaaaagcaaaccagg
tcaggattgcgattgttactcaagatggagcaatgtaaaagtgtagatcaagcattagca
aacctagataagatattgcctgttgaagagatcgtaagcacttag
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